FiT-DB / Search/ Help/ Sample detail

Os07g0294700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.92 (0.0373) R2 : 0.442
β1 : 1.7 (0.139) R2dD : 0.206 R2D : 0.118
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.5 (0.175) R2dE : 0.302 R2E : 0.224
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.112 (0.0845) R2dN8 : 0.00339 R2N8 : 0.0303
σ : 0.683
deviance : 215.32
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 27.03
memory length : 138
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 23.9
open length of G : 22.7

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
201.51 0.667 6.97 1.39 0.451 2.91 -0.192 2.32 -0.193 22.9 25.98 216 23.6 21.1
207.58 0.671 6.94 1.67 0.511 2.78 -0.52 -- -0.133 22.1 26.67 230 23.6 21.3
201.52 0.661 6.97 1.39 0.435 2.9 -- 2.39 -0.194 22.9 26.04 212 23.7 21.2
208.48 0.672 6.94 1.72 0.49 2.73 -- -- -0.115 22.7 26.5 230 23.8 21.2
208.27 0.672 6.98 1.34 -- 2.8 -- 2.65 -0.235 -- 26 167 23.8 22.1
291 0.8 7.02 1.15 0.548 -- 0.996 -- -0.584 3.69 -- -- -- --
293.76 0.803 7.02 1.13 0.551 -- -- -- -0.59 3.25 -- -- -- --
215.32 0.683 6.92 1.7 -- 2.5 -- -- -0.112 -- 27.03 138 23.9 22.7
276.59 0.775 7 -- 0.633 2.12 -- -- -0.45 23.8 26.36 245 0.143 19.1
310.98 0.824 7.02 1.15 -- -- -- -- -0.575 -- -- -- -- --
327.51 0.847 7.05 -- 0.574 -- -- -- -0.716 3.25 -- -- -- --
285.98 0.788 7 -- -- 1.91 -- -- -0.398 -- 26.74 160 23.7 22.1
346.17 0.868 7.05 -- -- -- -- -- -0.704 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 206.67 temperature 25.0 270 < th dose dependent rect. 24 20
57 218.76 temperature 25.0 10 < th dose dependent sin 0 NA
64 219.28 temperature 15.0 270 > th dose dependent sin 7 NA
101 221.52 temperature 30.0 270 < th dose dependent sin 7 NA
117 222.17 temperature 15.0 270 > th dose dependent rect. 17 22
132 223.15 temperature 15.0 10 > th dose dependent sin 4 NA
147 223.76 temperature 30.0 10 < th dose dependent sin 4 NA
231 226.08 temperature 25.0 720 < th dose dependent rect. 17 21
261 226.62 temperature 25.0 720 < th dose dependent rect. 8 23
268 226.78 temperature 25.0 720 < th dose dependent no NA NA
277 226.87 temperature 25.0 720 < th dose dependent rect. 13 23
332 227.72 temperature 20.0 30 > th dose dependent rect. 17 23
339 227.87 precipitation 0.1 14400 > th dose dependent rect. 20 3
349 227.96 temperature 30.0 10 < th dose dependent rect. 3 23
350 227.97 temperature 25.0 270 < th dose independent rect. 23 20
363 228.12 temperature 25.0 1440 < th dose dependent rect. 17 5
376 228.33 precipitation 0.1 14400 > th dose dependent rect. 21 1
384 228.48 temperature 30.0 10 < th dose dependent rect. 13 23
393 228.65 temperature 30.0 10 < th dose dependent rect. 7 23
404 228.79 temperature 30.0 10 < th dose dependent rect. 11 23
407 228.81 temperature 30.0 10 < th dose dependent no NA NA
413 228.88 temperature 20.0 1440 > th dose dependent rect. 24 3
420 228.97 temperature 30.0 10 < th dose dependent rect. 9 23
424 229.00 temperature 20.0 1440 > th dose dependent rect. 24 1
450 229.26 temperature 25.0 1440 < th dose dependent rect. 17 2
474 229.58 temperature 30.0 10 < th dose dependent rect. 15 23
499 229.91 atmosphere 995.0 14400 > th dose independent rect. 12 6
506 229.94 temperature 20.0 10 > th dose dependent rect. 23 23
510 229.96 atmosphere 995.0 14400 > th dose independent rect. 14 4
519 230.06 precipitation 0.1 14400 > th dose dependent rect. 17 1
536 230.22 temperature 15.0 720 > th dose dependent rect. 19 15
538 230.23 temperature 15.0 10 > th dose dependent no NA NA
546 230.30 atmosphere 995.0 14400 < th dose independent rect. 15 2
561 230.40 atmosphere 995.0 14400 < th dose independent rect. 14 4
587 230.51 atmosphere 995.0 14400 > th dose independent rect. 8 10
620 230.56 atmosphere 995.0 14400 < th dose dependent rect. 15 3
630 230.61 temperature 25.0 1440 < th dose dependent rect. 21 1
641 230.69 temperature 10.0 270 > th dose dependent rect. 2 23
649 230.73 atmosphere 995.0 14400 > th dose independent rect. 8 12
696 230.79 temperature 20.0 720 > th dose dependent rect. 23 8
699 230.80 wind 9.0 14400 > th dose independent rect. 4 9
702 230.82 temperature 10.0 270 > th dose dependent rect. 4 23
806 231.58 precipitation 0.1 14400 > th dose independent rect. 20 2
807 231.58 precipitation 0.1 14400 < th dose independent rect. 20 2
808 231.58 precipitation 0.1 14400 < th dose dependent rect. 20 2
823 231.67 temperature 25.0 1440 < th dose dependent sin 17 NA
844 231.84 temperature 20.0 10 > th dose dependent rect. 1 23
845 231.85 atmosphere 1005.0 14400 < th dose independent rect. 23 1
855 231.89 temperature 30.0 10 < th dose dependent rect. 21 23
867 231.94 precipitation 0.1 14400 > th dose independent rect. 17 1
868 231.97 temperature 25.0 1440 < th dose dependent rect. 11 15
911 232.13 temperature 30.0 10 < th dose dependent rect. 17 23
914 232.15 temperature 25.0 1440 < th dose dependent rect. 11 12
968 232.46 temperature 20.0 10 > th dose dependent rect. 21 23
986 232.57 temperature 30.0 10 < th dose dependent rect. 19 23