Os07g0290800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tic22-like family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0290800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Tic22-like family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 126.74 | 0.529 | 9.66 | 1.09 | 1.92 | 2.18 | 0.102 | -1.31 | -0.129 | 19.5 | 25.3 | 14 | -- | -- |
| 127.42 | 0.526 | 9.64 | 1.23 | 1.92 | 2.06 | 0.0969 | -- | -0.0992 | 19.5 | 25.2 | 13 | -- | -- |
| 126.77 | 0.524 | 9.66 | 1.09 | 1.92 | 2.19 | -- | -1.33 | -0.127 | 19.5 | 25.33 | 13 | -- | -- |
| 127.44 | 0.526 | 9.64 | 1.23 | 1.92 | 2.07 | -- | -- | -0.0997 | 19.5 | 25.2 | 13 | -- | -- |
| 240.85 | 0.723 | 9.66 | 0.799 | -- | 3 | -- | -1.96 | -0.322 | -- | 24.4 | 294 | -- | -- |
| 189.67 | 0.646 | 9.61 | 1.56 | 2.33 | -- | 1.03 | -- | 0.0509 | 18.2 | -- | -- | -- | -- |
| 192.26 | 0.649 | 9.61 | 1.55 | 2.34 | -- | -- | -- | 0.0542 | 18.2 | -- | -- | -- | -- |
| 244.71 | 0.729 | 9.63 | 1.02 | -- | 2.83 | -- | -- | -0.268 | -- | 24.3 | 294 | -- | -- |
| 165.75 | 0.6 | 9.68 | -- | 1.86 | 2.38 | -- | -- | -0.28 | 19.8 | 24.98 | 13 | -- | -- |
| 475.58 | 1.02 | 9.57 | 1.48 | -- | -- | -- | -- | 0.00317 | -- | -- | -- | -- | -- |
| 255.35 | 0.747 | 9.65 | -- | 2.32 | -- | -- | -- | -0.118 | 18.3 | -- | -- | -- | -- |
| 271.51 | 0.767 | 9.66 | -- | -- | 2.98 | -- | -- | -0.405 | -- | 24.2 | 294 | -- | -- |
| 533.64 | 1.08 | 9.61 | -- | -- | -- | -- | -- | -0.161 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 114.93 | temperature | 25 | 90 | > th | dose dependent | sin | 2 | NA |
| 7 | 117.31 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 9 |
| 8 | 117.73 | temperature | 25 | 270 | > th | dose dependent | sin | 5 | NA |
| 23 | 120.70 | temperature | 30 | 90 | < th | dose dependent | sin | 23 | NA |
| 34 | 121.21 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 5 |
| 54 | 122.91 | temperature | 25 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 62 | 123.39 | temperature | 25 | 270 | > th | dose independent | sin | 1 | NA |
| 68 | 123.59 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 17 |
| 70 | 123.75 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 21 |
| 78 | 123.92 | temperature | 25 | 270 | > th | dose dependent | rect. | 3 | 11 |
| 82 | 123.94 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 84 | 123.97 | temperature | 25 | 270 | < th | dose independent | sin | 2 | NA |
| 92 | 124.16 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 103 | 124.64 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 105 | 124.74 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 117 | 125.01 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 8 |
| 145 | 125.64 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 6 |
| 225 | 126.58 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 21 |
| 273 | 127.00 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 316 | 127.31 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 333 | 127.54 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 351 | 127.73 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 9 |
| 430 | 128.38 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 2 |
| 440 | 128.47 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 4 |
| 706 | 130.81 | temperature | 30 | 30 | < th | dose dependent | rect. | 6 | 17 |
| 859 | 132.07 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 975 | 133.06 | temperature | 30 | 10 | < th | dose dependent | rect. | 8 | 14 |