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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0289800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.67 (0.0424) R2 : 0.33
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.56 (0.104) R2dC : 0.332 R2C : 0.33
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0481 (0.0891) R2dN8 : 0.000552 R2N8 : -0.00148
σ : 0.798
deviance : 291.28
__
_____
C
peak time of C : 21.5
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
278.68 0.784 3.62 -0.477 1.56 0.823 -0.41 0.518 0.161 21.5 79 4233 -- --
278.91 0.778 3.62 -0.428 1.56 0.855 -0.412 -- 0.184 21.5 78.81 4217 -- --
279.31 0.778 3.62 -0.477 1.56 0.823 -- 0.518 0.161 21.5 79 4232 -- --
279.17 0.778 3.62 -0.405 1.56 0.838 -- -- 0.188 21.5 77 4245 -- --
404.31 0.942 3.64 -0.316 -- 0.487 -- -0.317 -0.11 -- 79 4232 -- --
286.82 0.794 3.68 -0.395 1.56 -- -0.434 -- -0.091 21.5 -- -- -- --
287.51 0.794 3.68 -0.378 1.56 -- -- -- -0.0902 21.5 -- -- -- --
401.89 0.938 3.64 -0.321 -- 0.519 -- -- -0.0981 -- 77 4245 -- --
283.41 0.784 3.61 -- 1.56 0.809 -- -- 0.225 21.4 76.75 4271 -- --
431.06 0.97 3.64 -0.368 -- -- -- -- -0.0947 -- -- -- -- --
291.28 0.798 3.67 -- 1.56 -- -- -- -0.0481 21.5 -- -- -- --
404.6 0.94 3.63 -- -- 0.526 -- -- -0.0627 -- 77 4245 -- --
434.62 0.973 3.63 -- -- -- -- -- -0.0539 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 274.42 atmosphere 995.0 90 > th dose independent rect. 23 18
2 275.01 temperature 30.0 270 < th dose dependent rect. 20 7
4 275.33 temperature 30.0 10 < th dose dependent rect. 20 10
5 275.34 temperature 30.0 90 < th dose dependent rect. 23 6
7 275.42 temperature 30.0 10 < th dose dependent rect. 23 7
13 275.85 temperature 20.0 90 > th dose independent rect. 7 10
14 275.98 temperature 20.0 90 > th dose independent rect. 9 8
16 276.07 wind 3.0 90 < th dose independent rect. 18 1
19 276.20 wind 7.0 270 < th dose dependent rect. 16 4
23 276.37 atmosphere 995.0 10 > th dose independent rect. 20 22
24 276.40 atmosphere 1000.0 90 > th dose independent rect. 13 4
26 276.45 atmosphere 1000.0 270 > th dose independent rect. 9 7
29 276.48 atmosphere 1000.0 270 > th dose independent rect. 11 4
33 276.51 temperature 25.0 270 < th dose dependent rect. 12 14
34 276.55 wind 5.0 90 < th dose independent rect. 17 6
36 276.56 atmosphere 995.0 90 > th dose independent rect. 19 23
41 276.62 wind 9.0 90 < th dose dependent rect. 17 6
53 276.91 wind 5.0 270 < th dose independent rect. 16 4
63 276.98 humidity 50.0 30 > th dose dependent rect. 17 20
71 277.06 atmosphere 995.0 90 > th dose dependent rect. 13 4
84 277.12 atmosphere 995.0 10 > th dose independent sin 6 NA
90 277.17 temperature 25.0 270 < th dose dependent rect. 23 2
92 277.20 temperature 15.0 270 > th dose dependent rect. 15 8
95 277.22 temperature 20.0 10 > th dose independent rect. 6 17
109 277.34 humidity 70.0 30 > th dose dependent rect. 6 14
118 277.40 humidity 50.0 90 > th dose dependent rect. 17 18
119 277.40 radiation 10.0 10 < th dose dependent rect. 20 21
122 277.42 wind 7.0 10 < th dose dependent rect. 18 2
123 277.43 wind 5.0 270 < th dose independent rect. 16 15
149 277.61 atmosphere 1000.0 10 < th dose dependent rect. 14 2
160 277.68 atmosphere 1015.0 90 < th dose dependent rect. 17 6
162 277.69 wind 7.0 90 < th dose independent rect. 23 18
172 277.76 precipitation 0.1 90 < th dose independent rect. 23 18
173 277.76 atmosphere 1000.0 90 < th dose dependent rect. 13 3
175 277.76 precipitation 0.1 90 < th dose dependent rect. 23 18
176 277.77 temperature 20.0 30 > th dose independent rect. 6 14
179 277.78 atmosphere 1000.0 90 < th dose dependent rect. 14 1
182 277.80 wind 3.0 720 > th dose dependent rect. 12 2
189 277.83 atmosphere 1000.0 270 > th dose independent rect. 13 1
191 277.84 temperature 20.0 90 > th dose independent rect. 17 6
192 277.85 temperature 20.0 270 > th dose independent rect. 15 7
202 277.89 radiation 10.0 10 < th dose dependent rect. 23 18
203 277.90 precipitation 0.1 10 < th dose independent rect. 20 22
204 277.90 precipitation 0.1 10 < th dose dependent rect. 20 22
222 277.95 atmosphere 995.0 270 > th dose dependent rect. 11 4
228 277.98 atmosphere 1010.0 90 < th dose independent rect. 10 7
230 277.99 wind 1.0 30 < th dose dependent rect. 2 1
231 277.99 atmosphere 1000.0 10 < th dose dependent rect. 16 1
235 277.99 humidity 70.0 30 > th dose dependent rect. 6 17
240 278.01 wind 1.0 10 < th dose independent rect. 7 2
242 278.01 wind 1.0 10 > th dose independent rect. 6 17
244 278.02 wind 1.0 10 > th dose independent rect. 6 14
247 278.03 temperature 25.0 270 < th dose dependent sin 17 NA
261 278.07 wind 1.0 10 < th dose independent rect. 2 1
264 278.07 temperature 30.0 10 > th dose dependent rect. 14 2
282 278.16 atmosphere 1000.0 270 > th dose dependent rect. 13 1
291 278.19 wind 7.0 30 < th dose independent rect. 17 10
293 278.19 wind 7.0 270 < th dose independent rect. 15 19
303 278.22 temperature 25.0 270 < th dose independent rect. 20 7
304 278.22 precipitation 0.1 10 < th dose independent rect. 20 10
305 278.22 temperature 30.0 10 > th dose dependent rect. 16 1
306 278.22 precipitation 0.1 10 < th dose dependent rect. 20 10
314 278.26 precipitation 0.1 10 < th dose independent rect. 23 7
318 278.26 precipitation 0.1 10 < th dose dependent rect. 23 7
329 278.29 wind 5.0 720 > th dose dependent rect. 12 10
331 278.30 atmosphere 995.0 90 > th dose independent rect. 17 6
338 278.32 atmosphere 1010.0 90 < th dose independent rect. 17 6
341 278.32 humidity 50.0 10 > th dose dependent rect. 18 2
343 278.32 temperature 30.0 10 > th dose dependent rect. 14 5
348 278.32 temperature 15.0 30 > th dose dependent rect. 7 10
366 278.35 temperature 20.0 30 > th dose independent rect. 18 2
395 278.39 wind 5.0 720 > th dose independent rect. 12 10
398 278.40 temperature 20.0 10 > th dose independent rect. 18 5
404 278.41 humidity 90.0 4320 < th dose independent rect. 4 5
406 278.41 temperature 15.0 90 > th dose independent rect. 23 18
427 278.44 temperature 10.0 90 > th dose dependent rect. 17 14
436 278.48 wind 1.0 90 > th dose independent rect. 17 6
437 278.48 temperature 20.0 10 > th dose independent rect. 3 20
445 278.50 wind 5.0 720 > th dose independent rect. 12 2
447 278.50 humidity 90.0 4320 < th dose independent rect. 3 7
449 278.50 humidity 80.0 90 < th dose independent rect. 22 19
453 278.51 radiation 20.0 90 < th dose independent rect. 17 6
463 278.52 humidity 80.0 4320 > th dose dependent rect. 4 6
465 278.53 temperature 30.0 10 > th dose dependent sin 12 NA
472 278.54 wind 5.0 720 > th dose dependent rect. 12 13
477 278.55 radiation 10.0 30 < th dose dependent rect. 20 10
488 278.57 wind 5.0 720 > th dose dependent rect. 12 7
496 278.58 wind 9.0 270 < th dose dependent rect. 16 15
502 278.59 temperature 10.0 90 > th dose dependent rect. 17 6
513 278.61 humidity 50.0 14400 > th dose independent rect. 18 6
517 278.61 temperature 15.0 30 > th dose dependent rect. 10 7
518 278.62 temperature 15.0 1440 > th dose independent rect. 7 14
519 278.62 humidity 50.0 270 < th dose dependent rect. 13 2
520 278.62 atmosphere 1015.0 270 < th dose dependent rect. 15 6
531 278.64 wind 5.0 720 > th dose dependent rect. 12 5
532 278.64 atmosphere 995.0 270 > th dose dependent rect. 10 6
535 278.65 temperature 25.0 30 > th dose independent rect. 14 3
538 278.65 humidity 70.0 30 > th dose dependent rect. 17 3
542 278.66 humidity 50.0 270 < th dose independent rect. 13 2
543 278.66 temperature 30.0 10 < th dose independent rect. 14 3
551 278.68 humidity 80.0 10 > th dose independent rect. 6 3
555 278.69 humidity 90.0 90 < th dose independent rect. 10 7
556 278.69 atmosphere 1010.0 90 < th dose independent rect. 7 10
557 278.69 wind 5.0 720 < th dose independent rect. 11 15
558 278.69 precipitation 0.1 10 < th dose independent rect. 23 19
562 278.69 precipitation 0.1 10 < th dose dependent rect. 23 19
568 278.71 temperature 20.0 10 > th dose independent rect. 1 22
578 278.72 humidity 50.0 4320 > th dose dependent rect. 5 3
592 278.75 humidity 60.0 10 > th dose independent rect. 13 4
593 278.75 wind 7.0 30 < th dose independent rect. 17 17
598 278.75 humidity 50.0 4320 > th dose dependent rect. 3 7
620 278.78 humidity 60.0 30 > th dose dependent rect. 6 7
627 278.79 humidity 80.0 4320 > th dose independent rect. 23 20
643 278.79 wind 9.0 30 < th dose dependent rect. 17 17
667 278.83 wind 1.0 90 < th dose independent rect. 6 1
675 278.84 temperature 25.0 270 < th dose independent rect. 13 14
690 278.85 humidity 50.0 4320 > th dose dependent rect. 4 5
692 278.85 radiation 10.0 30 < th dose dependent rect. 23 7
694 278.86 temperature 20.0 270 > th dose independent rect. 16 4
698 278.86 humidity 50.0 4320 > th dose dependent rect. 1 10
707 278.87 radiation 40.0 90 < th dose dependent rect. 17 6
727 278.90 humidity 80.0 4320 > th dose independent rect. 23 18
728 278.90 humidity 80.0 4320 < th dose independent rect. 22 21
734 278.90 humidity 90.0 4320 < th dose dependent rect. 22 12
739 278.92 humidity 70.0 4320 < th dose independent rect. 15 2
743 278.92 radiation 40.0 4320 < th dose dependent rect. 18 6
746 278.92 humidity 90.0 4320 < th dose dependent rect. 1 9
747 278.92 wind 9.0 10 < th dose dependent rect. 17 10
759 278.94 radiation 10.0 10 < th dose independent rect. 23 7
762 278.94 radiation 10.0 10 < th dose independent rect. 20 10
764 278.94 temperature 30.0 90 > th dose dependent rect. 14 1
774 278.96 wind 5.0 720 < th dose independent rect. 11 12
829 279.02 wind 5.0 720 < th dose independent rect. 11 8
833 279.02 wind 1.0 30 > th dose independent rect. 4 19
847 279.03 wind 9.0 90 < th dose dependent rect. 23 18
878 279.07 humidity 90.0 4320 > th dose independent rect. 7 1
880 279.07 wind 9.0 30 < th dose independent rect. 6 17
891 279.08 humidity 50.0 14400 > th dose independent rect. 18 3
902 279.09 humidity 50.0 90 > th dose independent rect. 17 6
911 279.09 radiation 40.0 90 < th dose dependent rect. 17 17
914 279.10 wind 7.0 270 < th dose independent rect. 4 16
929 279.11 humidity 90.0 4320 < th dose dependent rect. 4 4
934 279.12 humidity 90.0 4320 < th dose independent rect. 7 2
937 279.12 radiation 10.0 10 < th dose independent rect. 20 21
938 279.12 temperature 20.0 30 > th dose independent rect. 6 22
945 279.13 atmosphere 995.0 30 > th dose independent rect. 3 14
955 279.14 wind 9.0 30 < th dose independent rect. 6 14
965 279.15 humidity 80.0 4320 > th dose independent rect. 23 13
980 279.16 radiation 10.0 10 < th dose independent rect. 23 18
984 279.17 humidity 80.0 4320 > th dose independent sin 5 NA
992 279.17 humidity 70.0 4320 > th dose dependent sin 4 NA
996 279.17 temperature 30.0 10 < th dose dependent rect. 14 16