Os07g0289400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0289400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.67 | 0.354 | 8.39 | 1.26 | 0.556 | -1.53 | -0.175 | 1.72 | 0.647 | 21.8 | 20.96 | 1548 | -- | -- |
| 59.54 | 0.359 | 8.47 | 0.721 | 0.549 | -1.42 | 0.0893 | -- | 0.497 | 21.9 | 20.01 | 1527 | -- | -- |
| 56.62 | 0.35 | 8.38 | 1.36 | 0.554 | -1.54 | -- | 2.07 | 0.668 | 21.8 | 21.54 | 1527 | -- | -- |
| 59.19 | 0.358 | 8.46 | 0.774 | 0.723 | -1.55 | -- | -- | 0.508 | 21.8 | 21.21 | 2140 | -- | -- |
| 75.11 | 0.404 | 8.38 | 1.31 | -- | -1.51 | -- | 1.89 | 0.638 | -- | 21.61 | 1518 | -- | -- |
| 126.44 | 0.527 | 8.53 | 0.202 | 0.521 | -- | -0.171 | -- | 0.16 | 21.6 | -- | -- | -- | -- |
| 126.55 | 0.527 | 8.53 | 0.208 | 0.522 | -- | -- | -- | 0.16 | 21.6 | -- | -- | -- | -- |
| 79.92 | 0.416 | 8.45 | 0.786 | -- | -1.35 | -- | -- | 0.434 | -- | 22.43 | 5859 | -- | -- |
| 71.81 | 0.395 | 8.49 | -- | 0.58 | -1.19 | -- | -- | 0.376 | 22.2 | 21.99 | 1454 | -- | -- |
| 142.68 | 0.558 | 8.52 | 0.212 | -- | -- | -- | -- | 0.159 | -- | -- | -- | -- | -- |
| 127.69 | 0.529 | 8.54 | -- | 0.523 | -- | -- | -- | 0.137 | 21.6 | -- | -- | -- | -- |
| 90.05 | 0.442 | 8.47 | -- | -- | -1.16 | -- | -- | 0.365 | -- | 21.8 | 1519 | -- | -- |
| 143.86 | 0.56 | 8.52 | -- | -- | -- | -- | -- | 0.135 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.38 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 2 | 55.54 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 4 | 55.84 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 5 | 56.04 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 6 | 56.04 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 11 | 56.34 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 16 | 56.56 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 4 | 18 |
| 22 | 56.66 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 66 | 57.07 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 16 | 22 |
| 82 | 57.15 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 99 | 57.25 | temperature | 20.0 | 1440 | > th | dose dependent | no | NA | NA |
| 124 | 57.40 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 156 | 57.57 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 2 | NA |
| 182 | 57.65 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 19 | NA |
| 237 | 57.82 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 3 | 11 |
| 302 | 58.07 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 303 | 58.07 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 326 | 58.16 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 342 | 58.19 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 344 | 58.21 | temperature | 10.0 | 1440 | > th | dose dependent | sin | 0 | NA |
| 406 | 58.38 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 449 | 58.50 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 479 | 58.62 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 6 | 8 |
| 551 | 58.80 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |