Os07g0287000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os07g0287000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 176.81 | 0.625 | 4.38 | 0.918 | 0.367 | -2.16 | -1.15 | -3.53 | 0.34 | 5.78 | 24.8 | 1482 | -- | -- |
| 187.45 | 0.638 | 4.48 | 0.237 | 0.453 | -1.64 | -0.719 | -- | 0.15 | 7.17 | 25.04 | 2321 | -- | -- |
| 179.34 | 0.624 | 4.39 | 0.867 | 0.387 | -2.17 | -- | -3.35 | 0.316 | 6.75 | 24.79 | 1474 | -- | -- |
| 188.02 | 0.639 | 4.46 | 0.208 | 0.46 | -1.6 | -- | -- | 0.162 | 7.42 | 25.12 | 2356 | -- | -- |
| 186.64 | 0.636 | 4.38 | 0.886 | -- | -2.18 | -- | -3.39 | 0.345 | -- | 24.8 | 1441 | -- | -- |
| 233.66 | 0.717 | 4.37 | 0.848 | 0.413 | -- | -1.1 | -- | 0.591 | 5.76 | -- | -- | -- | -- |
| 236.22 | 0.72 | 4.37 | 0.844 | 0.415 | -- | -- | -- | 0.596 | 6.5 | -- | -- | -- | -- |
| 196.47 | 0.653 | 4.47 | 0.152 | -- | -1.67 | -- | -- | 0.174 | -- | 25.2 | 2674 | -- | -- |
| 188.34 | 0.639 | 4.47 | -- | 0.43 | -1.73 | -- | -- | 0.131 | 7.8 | 25.1 | 2440 | -- | -- |
| 245.2 | 0.732 | 4.37 | 0.854 | -- | -- | -- | -- | 0.605 | -- | -- | -- | -- | -- |
| 254.99 | 0.747 | 4.39 | -- | 0.427 | -- | -- | -- | 0.502 | 6.38 | -- | -- | -- | -- |
| 196.93 | 0.654 | 4.48 | -- | -- | -1.75 | -- | -- | 0.142 | -- | 25.2 | 2699 | -- | -- |
| 264.44 | 0.759 | 4.4 | -- | -- | -- | -- | -- | 0.51 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 172.67 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 3 |
| 19 | 174.16 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 5 |
| 68 | 175.20 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 11 |
| 69 | 175.20 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 13 |
| 75 | 175.25 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 15 |
| 121 | 175.55 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 21 |
| 124 | 175.58 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 140 | 175.67 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 145 | 175.72 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 149 | 175.74 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 192 | 176.01 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 221 | 176.17 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 249 | 176.37 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 16 |
| 285 | 176.57 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 410 | 176.99 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 429 | 177.06 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 507 | 177.42 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 520 | 177.48 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 586 | 177.89 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 7 |
| 591 | 177.90 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 645 | 178.24 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 15 |
| 648 | 178.26 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 10 |
| 659 | 178.34 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 15 |
| 665 | 178.37 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 10 |
| 674 | 178.41 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 7 |
| 729 | 178.67 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 754 | 178.81 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 787 | 178.98 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 889 | 179.49 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |