FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0286100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.97 (0.0432) R2 : 0.0102
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.197 (0.091) R2dN8 : 0.0131 R2N8 : 0.0102
σ : 0.814
deviance : 303.87
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
288.32 0.798 3.05 -0.483 0.296 0.536 -0.13 -1.18 -0.518 3.13 25.4 300 -- --
291.07 0.795 3.01 -0.148 0.323 0.499 0.272 -- -0.4 3.13 25.53 256 -- --
286.87 0.789 3.04 -0.475 0.246 0.571 -- -1.22 -0.505 3.6 25.6 414 -- --
290.78 0.794 3.01 -0.168 0.233 0.524 -- -- -0.417 3.79 25.53 414 -- --
287.39 0.79 3.05 -0.591 -- 0.593 -- -1.56 -0.513 -- 25.66 692 -- --
300.93 0.813 2.97 -0.0326 0.209 -- -0.367 -- -0.197 20.6 -- -- -- --
301.36 0.813 2.97 -0.0214 0.209 -- -- -- -0.198 20.9 -- -- -- --
290.95 0.794 3.02 -0.172 -- 0.52 -- -- -0.411 -- 25.6 700 -- --
291.49 0.795 3.01 -- 0.216 0.493 -- -- -0.387 3.65 25.6 414 -- --
303.86 0.815 2.97 -0.0213 -- -- -- -- -0.199 -- -- -- -- --
301.37 0.812 2.97 -- 0.209 -- -- -- -0.195 20.9 -- -- -- --
291.66 0.795 3.01 -- -- 0.514 -- -- -0.358 -- 25.6 719 -- --
303.87 0.814 2.97 -- -- -- -- -- -0.197 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 284.98 wind 9 10 > th dose independent rect. 15 1
9 284.98 wind 9 10 > th dose dependent rect. 15 1
17 285.03 humidity 70 10 < th dose independent rect. 15 5
31 285.34 temperature 25 270 > th dose independent rect. 11 21
43 285.75 temperature 25 270 > th dose independent rect. 12 16
58 286.11 humidity 70 10 < th dose independent rect. 15 3
60 286.19 temperature 20 720 > th dose dependent rect. 12 15
75 286.50 temperature 25 720 > th dose dependent rect. 13 19
94 286.72 temperature 25 720 > th dose dependent rect. 13 5
95 286.73 temperature 25 720 > th dose dependent rect. 15 3
113 286.90 temperature 25 720 > th dose dependent rect. 13 9
126 287.00 temperature 30 720 < th dose independent rect. 14 6
134 287.07 temperature 25 270 < th dose independent rect. 8 18
189 287.35 temperature 30 720 > th dose independent rect. 13 4
196 287.40 temperature 30 720 < th dose independent rect. 14 15
199 287.40 temperature 25 720 > th dose dependent sin 16 NA
205 287.44 humidity 70 10 < th dose independent rect. 15 1
217 287.51 temperature 20 720 > th dose dependent sin 18 NA
225 287.55 temperature 10 720 > th dose dependent rect. 12 15
227 287.57 humidity 80 10 < th dose dependent rect. 15 6
241 287.63 temperature 25 270 < th dose independent rect. 14 12
249 287.66 temperature 25 270 > th dose independent sin 17 NA
252 287.66 temperature 30 720 < th dose dependent rect. 16 3
253 287.67 temperature 30 720 > th dose independent rect. 15 2
274 287.73 humidity 80 10 < th dose dependent rect. 15 11
292 287.80 temperature 10 720 > th dose dependent rect. 12 11
296 287.81 temperature 10 720 > th dose dependent rect. 11 13
337 287.96 wind 9 30 > th dose dependent rect. 15 11
370 288.02 wind 9 30 > th dose dependent rect. 15 7
384 288.04 atmosphere 1000 30 < th dose dependent rect. 17 5
416 288.14 temperature 25 270 < th dose independent sin 17 NA
417 288.14 temperature 25 270 < th dose independent rect. 14 22
429 288.18 temperature 30 1440 < th dose independent rect. 14 2
431 288.18 temperature 10 720 > th dose dependent rect. 11 7
456 288.30 temperature 10 720 > th dose dependent rect. 11 21
467 288.34 temperature 30 720 < th dose independent rect. 23 21
479 288.40 temperature 30 720 < th dose independent rect. 8 10
502 288.49 temperature 25 10 < th dose independent rect. 17 9
624 288.72 atmosphere 1000 10 < th dose independent rect. 17 5
647 288.76 temperature 25 720 > th dose independent rect. 6 21
678 288.82 temperature 30 720 < th dose dependent rect. 11 17
680 288.82 temperature 30 720 < th dose dependent rect. 9 19
729 288.90 temperature 30 720 < th dose dependent rect. 13 15
757 288.96 temperature 30 720 < th dose independent rect. 8 12
812 289.07 temperature 25 270 > th dose independent no NA NA
821 289.08 humidity 50 4320 > th dose independent rect. 13 2
873 289.16 temperature 30 720 < th dose independent rect. 24 18
898 289.19 temperature 30 720 < th dose independent rect. 6 14
902 289.19 temperature 20 720 > th dose dependent rect. 2 23
908 289.20 temperature 25 270 > th dose independent rect. 20 23
913 289.21 temperature 25 720 > th dose independent rect. 2 23
933 289.24 temperature 30 720 < th dose dependent sin 19 NA
942 289.25 temperature 30 270 < th dose dependent rect. 15 12
950 289.26 temperature 30 270 < th dose dependent rect. 14 21
991 289.31 temperature 30 720 < th dose dependent rect. 11 9
1000 289.31 temperature 10 720 > th dose dependent rect. 5 18