Os07g0281900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os07g0281900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 125.73 | 0.527 | 3.18 | -0.246 | 0.129 | 1.08 | 0.41 | -3.11 | -0.0664 | 6.32 | 22.78 | 573 | -- | -- |
| 133.38 | 0.538 | 3.24 | -0.524 | 0.109 | 2.24 | 0.166 | -- | -0.16 | 2.54 | 20.07 | 574 | -- | -- |
| 126 | 0.523 | 3.18 | -0.269 | 0.137 | 1.13 | -- | -2.93 | -0.0789 | 5.54 | 22.52 | 592 | -- | -- |
| 132.96 | 0.537 | 3.25 | -0.586 | 0.169 | 2.31 | -- | -- | -0.198 | 4.8 | 19.65 | 582 | -- | -- |
| 126.93 | 0.525 | 3.19 | -0.266 | -- | 1.17 | -- | -2.86 | -0.0698 | -- | 22.6 | 585 | -- | -- |
| 166.9 | 0.606 | 3.28 | -0.993 | 0.219 | -- | -0.342 | -- | -0.363 | 7.54 | -- | -- | -- | -- |
| 167.2 | 0.606 | 3.28 | -1 | 0.221 | -- | -- | -- | -0.363 | 7.23 | -- | -- | -- | -- |
| 134.28 | 0.54 | 3.24 | -0.552 | -- | 2.26 | -- | -- | -0.174 | -- | 20.09 | 563 | -- | -- |
| 140.29 | 0.552 | 3.22 | -- | 0.143 | 2.58 | -- | -- | -0.099 | 4.67 | 20.07 | 577 | -- | -- |
| 169.79 | 0.609 | 3.28 | -0.998 | -- | -- | -- | -- | -0.359 | -- | -- | -- | -- | -- |
| 193.64 | 0.651 | 3.25 | -- | 0.212 | -- | -- | -- | -0.251 | 7.54 | -- | -- | -- | -- |
| 141.35 | 0.554 | 3.22 | -- | -- | 2.55 | -- | -- | -0.0907 | -- | 20.23 | 571 | -- | -- |
| 196.05 | 0.654 | 3.26 | -- | -- | -- | -- | -- | -0.248 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 126.73 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 22 |
| 18 | 128.04 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 22 |
| 24 | 128.24 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 25 | 128.25 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 28 | 128.29 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 22 |
| 31 | 128.33 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 34 | 128.37 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 35 | 128.37 | temperature | 20 | 1440 | < th | dose dependent | rect. | 2 | 13 |
| 37 | 128.39 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 38 | 128.41 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 43 | 128.47 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 23 |
| 45 | 128.51 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 17 |
| 56 | 128.65 | temperature | 20 | 720 | < th | dose dependent | rect. | 13 | 17 |
| 136 | 129.26 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 12 |
| 147 | 129.34 | humidity | 90 | 14400 | > th | dose dependent | rect. | 1 | 9 |
| 187 | 129.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 22 |
| 190 | 129.53 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 206 | 129.65 | temperature | 20 | 1440 | < th | dose dependent | sin | 4 | NA |
| 216 | 129.73 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 5 |
| 252 | 129.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 19 |
| 259 | 130.02 | humidity | 90 | 14400 | > th | dose dependent | sin | 9 | NA |
| 289 | 130.09 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 23 |
| 296 | 130.11 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 318 | 130.22 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 22 |
| 388 | 130.47 | temperature | 20 | 90 | < th | dose dependent | rect. | 18 | 22 |
| 393 | 130.49 | temperature | 20 | 720 | < th | dose dependent | sin | 13 | NA |
| 458 | 130.71 | temperature | 20 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 528 | 131.02 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 6 |
| 539 | 131.04 | temperature | 20 | 90 | < th | dose dependent | rect. | 4 | 23 |
| 541 | 131.06 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 551 | 131.10 | temperature | 20 | 90 | < th | dose dependent | rect. | 11 | 19 |
| 601 | 131.26 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 615 | 131.28 | temperature | 20 | 90 | < th | dose dependent | rect. | 18 | 18 |
| 629 | 131.31 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 638 | 131.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 3 |
| 653 | 131.35 | temperature | 20 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 701 | 131.46 | temperature | 20 | 90 | < th | dose dependent | no | NA | NA |
| 737 | 131.54 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 3 |
| 925 | 131.94 | temperature | 10 | 720 | > th | dose dependent | sin | 11 | NA |
| 975 | 132.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 981 | 132.06 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 982 | 132.06 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 6 |