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Os07g0281500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.81 (0.0233) R2 : 0.164
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.515 (0.0559) R2dC : 0.156 R2C : 0.153
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.102 (0.0489) R2dN8 : 0.0104 R2N8 : 0.00757
σ : 0.439
deviance : 87.88
__
_____
C
peak time of C : 22.7
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
82.02 0.426 5.8 0.212 0.522 -0.439 0.282 -1.77 0.118 22.8 1015 4423 -- --
84.23 0.427 5.83 -0.0617 0.506 -0.271 0.272 -- 0.0228 22.9 1011 14348 -- --
82.34 0.423 5.8 0.201 0.521 -0.434 -- -1.77 0.117 22.7 1015 4423 -- --
84.37 0.428 5.83 -0.0867 0.51 -0.265 -- -- 0.0221 22.6 1011 13667 -- --
98.89 0.463 5.77 0.119 -- -0.877 -- -2.51 0.103 -- 1016 4533 -- --
87.56 0.439 5.81 0.0511 0.515 -- 0.26 -- 0.107 22.8 -- -- -- --
87.83 0.439 5.81 0.0411 0.514 -- -- -- 0.107 22.7 -- -- -- --
100.55 0.467 5.82 -0.0801 -- -0.276 -- -- 0.0162 -- 1011 13653 -- --
84.52 0.428 5.83 -- 0.515 -0.256 -- -- 0.0279 22.6 1010 13264 -- --
104.15 0.477 5.8 0.0509 -- -- -- -- 0.11 -- -- -- -- --
87.88 0.439 5.81 -- 0.515 -- -- -- 0.102 22.7 -- -- -- --
100.7 0.467 5.82 -- -- -0.259 -- -- 0.03 -- 1011 13652 -- --
104.22 0.476 5.8 -- -- -- -- -- 0.104 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 77.70 radiation 30.0 30 < th dose independent rect. 10 15
2 77.96 radiation 30.0 30 < th dose independent rect. 8 17
8 78.34 radiation 40.0 90 < th dose dependent rect. 10 15
9 78.40 radiation 20.0 270 < th dose independent rect. 7 16
13 78.55 humidity 80.0 14400 < th dose independent rect. 6 1
20 78.78 humidity 80.0 14400 > th dose independent rect. 6 1
30 78.96 humidity 80.0 14400 > th dose independent rect. 2 1
32 79.00 radiation 20.0 270 < th dose independent rect. 6 9
36 79.05 humidity 80.0 14400 < th dose dependent rect. 6 1
42 79.14 radiation 40.0 90 < th dose dependent rect. 8 17
46 79.22 humidity 80.0 14400 > th dose independent rect. 2 5
85 79.58 humidity 80.0 14400 < th dose independent rect. 2 5
101 79.66 temperature 20.0 90 > th dose dependent rect. 1 2
110 79.70 humidity 80.0 14400 < th dose independent rect. 2 1
124 79.80 radiation 40.0 270 < th dose independent rect. 3 21
133 79.84 temperature 20.0 10 > th dose dependent rect. 2 1
137 79.87 humidity 90.0 14400 < th dose dependent rect. 2 4
141 79.91 radiation 20.0 720 < th dose independent rect. 3 11
147 79.94 radiation 30.0 30 < th dose independent rect. 8 8
155 79.97 humidity 90.0 14400 < th dose dependent rect. 2 1
169 80.03 radiation 20.0 720 < th dose independent rect. 3 9
211 80.18 radiation 30.0 10 < th dose independent rect. 4 21
220 80.20 radiation 40.0 270 < th dose dependent rect. 6 9
230 80.24 wind 9.0 14400 > th dose independent rect. 10 2
255 80.31 radiation 20.0 270 < th dose independent sin 23 NA
265 80.32 wind 9.0 14400 < th dose independent rect. 10 2
269 80.34 radiation 30.0 30 < th dose independent rect. 10 2
270 80.34 wind 7.0 4320 < th dose independent rect. 21 6
298 80.43 temperature 20.0 10 > th dose independent rect. 2 1
314 80.48 wind 3.0 14400 < th dose dependent rect. 4 10
316 80.49 wind 7.0 1440 < th dose independent rect. 21 12
322 80.50 wind 1.0 30 > th dose independent rect. 2 1
323 80.50 wind 3.0 14400 < th dose independent rect. 5 1
357 80.58 radiation 30.0 10 < th dose independent rect. 8 5
359 80.58 radiation 30.0 30 < th dose independent rect. 10 6
361 80.58 atmosphere 1015.0 30 < th dose dependent rect. 2 1
393 80.66 humidity 80.0 30 > th dose independent rect. 2 1
394 80.66 temperature 25.0 30 < th dose independent rect. 1 9
406 80.67 atmosphere 1015.0 4320 > th dose dependent rect. 14 1
418 80.68 humidity 70.0 30 > th dose dependent rect. 2 1
424 80.69 humidity 50.0 30 > th dose dependent rect. 2 1
428 80.70 wind 9.0 30 < th dose independent rect. 2 1
429 80.70 temperature 10.0 30 > th dose independent rect. 2 1
431 80.70 temperature 30.0 30 < th dose independent rect. 2 1
432 80.70 humidity 50.0 30 > th dose independent rect. 2 1
436 80.70 atmosphere 995.0 30 > th dose independent rect. 2 1
437 80.70 atmosphere 1010.0 30 < th dose independent rect. 2 1
439 80.70 radiation 1.0 30 < th dose independent rect. 2 1
444 80.70 precipitation 0.1 30 < th dose independent rect. 2 1
445 80.70 wind 9.0 14400 < th dose independent rect. 6 7
447 80.70 radiation 20.0 270 < th dose independent rect. 18 21
448 80.70 temperature 10.0 30 > th dose independent rect. 3 23
449 80.70 radiation 1.0 30 < th dose dependent rect. 2 1
454 80.70 precipitation 0.1 30 < th dose dependent rect. 2 1
459 80.71 wind 3.0 14400 > th dose independent rect. 5 1
462 80.71 radiation 30.0 10 < th dose dependent rect. 10 3
463 80.72 wind 3.0 30 < th dose independent rect. 2 1
479 80.75 wind 9.0 30 < th dose dependent rect. 2 1
481 80.76 atmosphere 1005.0 30 > th dose independent rect. 2 1
509 80.79 atmosphere 995.0 30 > th dose dependent rect. 2 1
514 80.80 wind 7.0 4320 > th dose independent rect. 21 6
522 80.80 radiation 30.0 720 < th dose dependent rect. 3 11
540 80.83 atmosphere 1015.0 4320 > th dose independent rect. 14 6
557 80.85 wind 3.0 14400 < th dose dependent sin 4 NA
600 80.87 radiation 20.0 720 < th dose independent sin 4 NA
618 80.90 wind 3.0 14400 < th dose dependent rect. 5 1
646 80.94 wind 5.0 4320 > th dose dependent rect. 21 6
660 80.96 wind 7.0 1440 > th dose independent rect. 21 12
670 80.97 temperature 30.0 30 < th dose dependent rect. 2 1
707 81.02 radiation 1.0 43200 < th dose dependent rect. 3 1
717 81.04 wind 7.0 4320 < th dose independent rect. 21 4
744 81.07 wind 7.0 4320 < th dose independent rect. 24 3
745 81.07 wind 1.0 14400 > th dose independent rect. 4 13
746 81.07 radiation 20.0 720 < th dose independent rect. 23 15
754 81.08 radiation 40.0 270 < th dose dependent sin 23 NA
755 81.08 wind 9.0 14400 > th dose dependent rect. 11 2
757 81.08 wind 1.0 14400 < th dose dependent rect. 6 11
761 81.09 wind 3.0 14400 < th dose independent rect. 4 3
768 81.09 wind 7.0 4320 > th dose dependent rect. 21 1
785 81.10 humidity 60.0 43200 < th dose dependent rect. 20 13
847 81.19 wind 7.0 1440 < th dose independent rect. 24 9
848 81.19 wind 1.0 14400 > th dose independent rect. 4 10
856 81.19 atmosphere 1015.0 4320 > th dose dependent rect. 13 7
862 81.20 wind 1.0 14400 < th dose independent rect. 4 13
886 81.23 wind 7.0 4320 < th dose independent rect. 24 1
900 81.24 wind 3.0 14400 < th dose independent rect. 2 5
916 81.26 wind 3.0 14400 > th dose independent rect. 4 3
921 81.26 wind 3.0 14400 < th dose independent rect. 24 14
933 81.27 radiation 20.0 720 < th dose independent rect. 3 16
944 81.28 radiation 10.0 720 < th dose dependent rect. 10 2
950 81.29 humidity 60.0 43200 > th dose independent rect. 24 1
964 81.30 wind 7.0 4320 > th dose independent rect. 21 4
967 81.30 wind 1.0 14400 < th dose independent rect. 4 10
991 81.31 radiation 20.0 720 < th dose dependent rect. 3 16