Os07g0280200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : AMP-dependent synthetase and ligase domain containing protein.
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Os07g0280200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : AMP-dependent synthetase and ligase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 154.89 | 0.585 | 11.4 | 0.0897 | 2 | -3.51 | 0.392 | 13.3 | 0.553 | 8.55 | 94.68 | 238 | 11.2 | -- |
| 196.32 | 0.653 | 11.3 | 0.244 | 1.94 | -5.29 | 0.627 | -- | 0.78 | 8.89 | 94.9 | 253 | 12.4 | -- |
| 141.65 | 0.554 | 11.4 | 0.0946 | 1.98 | -3.75 | -- | 10.7 | 0.593 | 8.55 | 94.88 | 238 | 13.7 | -- |
| 190.22 | 0.642 | 11.4 | 0.227 | 2.1 | -6.02 | -- | -- | 0.692 | 8.47 | 94.92 | 253 | 12.5 | -- |
| 353.9 | 0.876 | 11.4 | 0.0884 | -- | -3.5 | -- | 11 | 0.621 | -- | 94.87 | 238 | 13.7 | -- |
| 299.79 | 0.812 | 11.4 | 0.201 | 1.87 | -- | 0.593 | -- | 0.716 | 9.06 | -- | -- | -- | -- |
| 301 | 0.812 | 11.4 | 0.222 | 1.86 | -- | -- | -- | 0.717 | 9.09 | -- | -- | -- | -- |
| 299.37 | 0.806 | 11.4 | 0.238 | -- | -2.02 | -- | -- | 0.714 | -- | -73.12 | 253 | 11.2 | -- |
| 185.48 | 0.634 | 11.4 | -- | 2.02 | -7.2 | -- | -- | 0.594 | 8.4 | 94.93 | 253 | 12.4 | -- |
| 501.38 | 1.05 | 11.4 | 0.218 | -- | -- | -- | -- | 0.728 | -- | -- | -- | -- | -- |
| 302.3 | 0.813 | 11.4 | -- | 1.86 | -- | -- | -- | 0.692 | 9.09 | -- | -- | -- | -- |
| 300.11 | 0.807 | 11.4 | -- | -- | -1.98 | -- | -- | 0.68 | -- | -163 | 347 | 11.9 | -- |
| 502.64 | 1.05 | 11.4 | -- | -- | -- | -- | -- | 0.703 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 176.72 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 176.72 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 3 | 192.41 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 6 |
| 4 | 192.41 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 6 |
| 9 | 193.02 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 10 | 193.04 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 4 |
| 11 | 193.04 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 4 |
| 24 | 194.83 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 12 | 3 |
| 56 | 198.44 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 61 | 200.19 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 101 | 212.00 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 109 | 213.36 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 24 | 7 |
| 119 | 216.71 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 1 |
| 120 | 216.71 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 1 |
| 134 | 218.22 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 19 | 6 |
| 144 | 220.15 | wind | 1.0 | 720 | < th | dose independent | rect. | 23 | 1 |
| 146 | 220.23 | wind | 1.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 163 | 222.99 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 20 | 3 |
| 169 | 223.42 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 20 | 1 |
| 199 | 227.72 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 213 | 229.01 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 1 | 1 |
| 217 | 229.69 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 21 | 8 |
| 219 | 229.88 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 221 | 229.88 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 223 | 229.88 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 274 | 229.88 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 276 | 229.88 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 278 | 229.88 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 352 | 232.40 | humidity | 90.0 | 270 | > th | dose dependent | sin | 14 | NA |
| 380 | 234.04 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 12 | 2 |
| 382 | 234.16 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 21 | 11 |
| 390 | 234.46 | humidity | 90.0 | 720 | > th | dose independent | rect. | 20 | 3 |
| 392 | 234.46 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 11 | 14 |
| 396 | 234.69 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 23 | 1 |
| 399 | 234.77 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 5 | 23 |
| 456 | 236.50 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 12 | 2 |
| 459 | 236.55 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 17 |
| 503 | 237.16 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 512 | 237.24 | wind | 1.0 | 270 | < th | dose dependent | rect. | 24 | 1 |
| 548 | 238.03 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 592 | 238.67 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 18 | 9 |
| 608 | 238.85 | humidity | 90.0 | 30 | > th | dose dependent | sin | 9 | NA |
| 702 | 240.56 | atmosphere | 1005.0 | 10 | < th | dose dependent | sin | 8 | NA |
| 713 | 240.64 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 20 | 23 |
| 728 | 240.79 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 20 | 12 |
| 743 | 240.90 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 20 | 18 |
| 750 | 240.93 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 765 | 241.03 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 13 | 19 |
| 783 | 241.12 | humidity | 90.0 | 30 | > th | dose independent | sin | 8 | NA |
| 786 | 241.15 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 17 | 15 |
| 791 | 241.16 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 813 | 241.25 | humidity | 90.0 | 30 | > th | dose dependent | no | NA | NA |
| 814 | 241.25 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 17 | 21 |
| 847 | 241.44 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 867 | 241.50 | atmosphere | 1005.0 | 720 | < th | dose independent | sin | 14 | NA |
| 884 | 241.64 | atmosphere | 1005.0 | 270 | < th | dose independent | sin | 11 | NA |
| 897 | 241.71 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 7 | 23 |
| 912 | 241.88 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 23 | 8 |