Os07g0277200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0277200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 146.9 | 0.569 | 10.1 | -1.87 | 3.29 | 1.74 | -2.63 | -3.61 | -0.463 | 21.8 | 20.2 | 731 | 4.07 | -- |
| 174.24 | 0.615 | 10 | -1.25 | 3.33 | 1.86 | -1.93 | -- | -0.331 | 21.8 | 20.26 | 771 | 4.4 | -- |
| 166.84 | 0.602 | 10.1 | -1.76 | 2.99 | 1.67 | -- | -3.32 | -0.432 | 21.6 | 20.7 | 799 | 6.01 | -- |
| 186.89 | 0.637 | 10 | -1.24 | 3.48 | 1.9 | -- | -- | -0.315 | 22 | 20.1 | 777 | 3.81 | -- |
| 265.03 | 0.762 | 9.9 | -0.902 | -- | 2.49 | -- | -2.17 | -0.0421 | -- | 17.6 | 10 | 6.89 | -- |
| 249.16 | 0.74 | 9.93 | -0.755 | 2.53 | -- | -2.27 | -- | 0.0283 | 22.8 | -- | -- | -- | -- |
| 270.66 | 0.77 | 9.93 | -0.662 | 2.55 | -- | -- | -- | 0.0365 | 22.8 | -- | -- | -- | -- |
| 270.66 | 0.766 | 9.87 | -0.662 | -- | 2.54 | -- | -- | 0.0364 | -- | 11.45 | 7 | 7.28 | -- |
| 218.39 | 0.688 | 9.99 | -- | 3.36 | 1.71 | -- | -- | -0.132 | 21.7 | 20.3 | 639 | 3.6 | -- |
| 671.82 | 1.21 | 9.86 | -0.61 | -- | -- | -- | -- | 0.0518 | -- | -- | -- | -- | -- |
| 282.22 | 0.786 | 9.91 | -- | 2.54 | -- | -- | -- | 0.11 | 22.8 | -- | -- | -- | -- |
| 282.22 | 0.782 | 9.85 | -- | -- | 2.54 | -- | -- | 0.11 | -- | 10.31 | 11 | 7.33 | -- |
| 681.65 | 1.22 | 9.85 | -- | -- | -- | -- | -- | 0.12 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 145.12 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 12 |
| 2 | 147.25 | temperature | 20 | 720 | > th | dose independent | sin | 10 | NA |
| 11 | 148.91 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 7 |
| 12 | 148.95 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 16 |
| 15 | 149.09 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 12 |
| 33 | 150.86 | temperature | 20 | 720 | < th | dose independent | sin | 9 | NA |
| 162 | 159.97 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 181 | 161.24 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 5 |
| 195 | 161.79 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 21 |
| 220 | 162.76 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 12 |
| 283 | 164.56 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 323 | 165.28 | temperature | 25 | 720 | < th | dose dependent | sin | 9 | NA |
| 332 | 165.46 | temperature | 15 | 720 | > th | dose dependent | sin | 9 | NA |
| 509 | 168.47 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 540 | 169.15 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 631 | 170.31 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 23 |
| 644 | 170.66 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 23 |
| 670 | 171.08 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 1 |
| 678 | 171.18 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 725 | 171.91 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 746 | 172.15 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 23 |
| 756 | 172.30 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 6 |
| 758 | 172.33 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 23 |
| 770 | 172.51 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 4 |
| 772 | 172.54 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |