Os07g0272900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0272900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 102.62 | 0.476 | 7.94 | 0.142 | 1.64 | -1.28 | 0.379 | 5.37 | -0.177 | 20.6 | 30.2 | 694 | -- | -- |
| 111.99 | 0.497 | 7.99 | -0.473 | 1.45 | -0.292 | 0.231 | -- | -0.171 | 20.6 | 30.2 | 694 | -- | -- |
| 103.05 | 0.473 | 7.93 | 0.183 | 1.63 | -1.32 | -- | 5.95 | -0.172 | 20.6 | 30.2 | 692 | -- | -- |
| 104.96 | 0.477 | 7.99 | -0.43 | 1.54 | -0.54 | -- | -- | -0.173 | 20.8 | 30.4 | 861 | -- | -- |
| 226.98 | 0.702 | 7.85 | 0.536 | -- | -0.94 | -- | 5.74 | -0.21 | -- | 32.91 | 1384 | -- | -- |
| 114.47 | 0.502 | 7.99 | -0.504 | 1.44 | -- | 0.225 | -- | -0.146 | 20.8 | -- | -- | -- | -- |
| 114.64 | 0.501 | 7.99 | -0.511 | 1.44 | -- | -- | -- | -0.146 | 20.7 | -- | -- | -- | -- |
| 226.76 | 0.701 | 7.94 | -0.373 | -- | -0.393 | -- | -- | -0.125 | -- | 27.7 | 4457 | -- | -- |
| 108.74 | 0.486 | 8 | -- | 1.55 | -0.632 | -- | -- | -0.178 | 20.7 | 30.5 | 885 | -- | -- |
| 231.45 | 0.711 | 7.95 | -0.513 | -- | -- | -- | -- | -0.158 | -- | -- | -- | -- | -- |
| 121.52 | 0.516 | 7.97 | -- | 1.44 | -- | -- | -- | -0.0893 | 20.7 | -- | -- | -- | -- |
| 227.21 | 0.702 | 7.96 | -- | -- | -0.456 | -- | -- | -0.203 | -- | 30.4 | 5799 | -- | -- |
| 238.4 | 0.721 | 7.93 | -- | -- | -- | -- | -- | -0.101 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 100.51 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 22 |
| 3 | 100.89 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 11 |
| 6 | 101.16 | humidity | 50 | 90 | > th | dose dependent | rect. | 15 | 12 |
| 7 | 101.17 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 12 |
| 8 | 101.19 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 3 |
| 17 | 101.36 | humidity | 70 | 90 | > th | dose independent | rect. | 15 | 12 |
| 20 | 101.49 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 19 |
| 26 | 101.84 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 11 |
| 49 | 102.30 | temperature | 30 | 720 | > th | dose dependent | rect. | 17 | 22 |
| 54 | 102.38 | humidity | 50 | 270 | > th | dose independent | rect. | 15 | 11 |
| 56 | 102.38 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 20 |
| 68 | 102.52 | temperature | 30 | 720 | > th | dose dependent | rect. | 10 | 5 |
| 76 | 102.56 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 23 |
| 95 | 102.60 | temperature | 30 | 720 | > th | dose independent | rect. | 17 | 23 |
| 101 | 102.64 | temperature | 30 | 720 | > th | dose dependent | sin | 5 | NA |
| 109 | 102.67 | temperature | 30 | 720 | < th | dose independent | sin | 22 | NA |
| 140 | 102.78 | temperature | 30 | 720 | > th | dose independent | rect. | 9 | 10 |
| 157 | 102.79 | temperature | 30 | 720 | < th | dose independent | rect. | 6 | 17 |
| 160 | 102.81 | temperature | 30 | 720 | > th | dose independent | rect. | 14 | 23 |
| 177 | 102.82 | temperature | 30 | 720 | > th | dose dependent | rect. | 11 | 2 |
| 179 | 102.83 | temperature | 30 | 720 | > th | dose independent | sin | 0 | NA |
| 185 | 102.85 | temperature | 30 | 720 | > th | dose independent | no | NA | NA |
| 298 | 102.94 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 317 | 102.96 | temperature | 30 | 720 | > th | dose independent | rect. | 9 | 7 |
| 321 | 102.97 | temperature | 30 | 720 | > th | dose dependent | rect. | 9 | 10 |
| 331 | 102.97 | radiation | 10 | 90 | < th | dose dependent | rect. | 8 | 19 |
| 337 | 102.98 | temperature | 30 | 720 | < th | dose independent | no | NA | NA |
| 340 | 102.98 | temperature | 30 | 720 | > th | dose dependent | no | NA | NA |
| 499 | 103.05 | humidity | 50 | 90 | > th | dose dependent | rect. | 9 | 18 |
| 522 | 103.09 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 567 | 103.15 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 7 |
| 600 | 103.23 | humidity | 50 | 720 | > th | dose independent | rect. | 16 | 17 |
| 633 | 103.30 | temperature | 15 | 90 | > th | dose dependent | rect. | 13 | 9 |
| 635 | 103.31 | temperature | 30 | 720 | < th | dose independent | rect. | 18 | 23 |
| 659 | 103.37 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 19 |
| 677 | 103.42 | temperature | 30 | 720 | < th | dose independent | rect. | 2 | 23 |
| 681 | 103.43 | humidity | 50 | 720 | > th | dose independent | rect. | 15 | 19 |
| 696 | 103.50 | humidity | 80 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 718 | 103.53 | humidity | 70 | 10 | > th | dose independent | rect. | 12 | 16 |
| 721 | 103.55 | temperature | 30 | 720 | < th | dose independent | sin | 9 | NA |
| 724 | 103.56 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 739 | 103.62 | humidity | 50 | 720 | > th | dose independent | rect. | 16 | 1 |
| 754 | 103.66 | radiation | 10 | 90 | < th | dose dependent | rect. | 13 | 14 |
| 755 | 103.67 | temperature | 30 | 720 | > th | dose independent | sin | 9 | NA |
| 764 | 103.70 | radiation | 1 | 1440 | < th | dose independent | rect. | 23 | 7 |
| 800 | 103.73 | humidity | 70 | 10 | > th | dose independent | rect. | 16 | 12 |
| 804 | 103.74 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 14 |
| 810 | 103.75 | humidity | 50 | 720 | > th | dose independent | rect. | 15 | 3 |
| 811 | 103.75 | radiation | 1 | 1440 | < th | dose independent | rect. | 19 | 11 |
| 843 | 103.80 | radiation | 1 | 1440 | > th | dose independent | rect. | 4 | 2 |
| 871 | 103.81 | radiation | 1 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 969 | 103.82 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |