Os07g0272800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os07g0272800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 88.28 | 0.441 | 9.57 | 0.517 | 1.74 | -2.04 | -1.42 | 0.699 | -0.0642 | 22.2 | 23.54 | 642 | -- | -- |
| 87.89 | 0.437 | 9.56 | 0.607 | 1.75 | -2.23 | -1.54 | -- | -0.0255 | 22.3 | 23 | 607 | -- | -- |
| 95.14 | 0.454 | 9.58 | 0.48 | 1.75 | -2.02 | -- | 1.38 | -0.0692 | 22.3 | 23.21 | 613 | -- | -- |
| 97.34 | 0.46 | 9.55 | 0.66 | 1.75 | -2.26 | -- | -- | -0.0244 | 22.3 | 22.97 | 614 | -- | -- |
| 253.05 | 0.741 | 9.62 | 0.0461 | -- | -2.74 | -- | 2.08 | -0.393 | -- | 26.9 | 734 | -- | -- |
| 149.47 | 0.573 | 9.48 | 1.17 | 1.96 | -- | -1.67 | -- | 0.321 | 22.2 | -- | -- | -- | -- |
| 160.52 | 0.593 | 9.48 | 1.23 | 1.96 | -- | -- | -- | 0.324 | 22.2 | -- | -- | -- | -- |
| 258.2 | 0.748 | 9.57 | 0.443 | -- | -2.85 | -- | -- | -0.306 | -- | 26.41 | 740 | -- | -- |
| 107.53 | 0.483 | 9.56 | -- | 1.7 | -2.56 | -- | -- | -0.0857 | 22.4 | 22.8 | 620 | -- | -- |
| 394.39 | 0.928 | 9.43 | 1.26 | -- | -- | -- | -- | 0.328 | -- | -- | -- | -- | -- |
| 200.38 | 0.662 | 9.51 | -- | 1.97 | -- | -- | -- | 0.187 | 22.3 | -- | -- | -- | -- |
| 262.77 | 0.755 | 9.59 | -- | -- | -3.03 | -- | -- | -0.388 | -- | 26.41 | 746 | -- | -- |
| 436.14 | 0.975 | 9.46 | -- | -- | -- | -- | -- | 0.189 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 81.96 | temperature | 25 | 720 | < th | dose dependent | sin | 9 | NA |
| 3 | 82.64 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 15 |
| 4 | 82.72 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 6 |
| 7 | 82.89 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 9 |
| 8 | 82.91 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 12 |
| 49 | 85.32 | temperature | 15 | 720 | > th | dose dependent | rect. | 22 | 9 |
| 60 | 85.96 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 17 |
| 78 | 86.59 | temperature | 20 | 720 | < th | dose independent | sin | 9 | NA |
| 83 | 86.85 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 12 |
| 87 | 86.89 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 13 |
| 101 | 87.21 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 14 |
| 110 | 87.42 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 14 |
| 112 | 87.47 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 16 |
| 115 | 87.51 | temperature | 20 | 720 | > th | dose independent | sin | 9 | NA |
| 310 | 90.51 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 21 |
| 311 | 90.52 | temperature | 15 | 720 | > th | dose dependent | sin | 9 | NA |
| 423 | 91.91 | temperature | 15 | 270 | > th | dose dependent | sin | 6 | NA |
| 519 | 93.00 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 613 | 94.05 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 617 | 94.10 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 648 | 94.46 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 23 |
| 665 | 94.66 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 23 |
| 673 | 94.74 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 9 |
| 685 | 94.90 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 738 | 95.48 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 802 | 96.07 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 23 |
| 807 | 96.09 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 23 |