FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0266700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.72 (0.0522) R2 : 0.592
β1 : -3.4 (0.194) R2dD : 0.297 R2D : 0.105
β2 : 0.923 (0.161) R2dC : 0.0416 R2C : 0.0842
β3 : 2.18 (0.203) R2dE : 0.153 R2E : 0.0692
β4 : -4.95 (0.615) R2dD*C : 0.0606 R2D*C : -0.0199
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.46 (0.115) R2dN8 : 0.207 R2N8 : 0.0275
σ : 0.972
deviance : 435.16
__
_____
C
peak time of C : 18.7
E
wheather : temperature
threshold : 19.73
memory length : 198
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 8.24
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
421.07 0.964 4.82 -4.22 1.24 2.46 -3.99 -5.24 -1.71 18.1 20.43 297 7.86 --
435.16 0.972 4.72 -3.4 0.923 2.18 -4.95 -- -1.46 18.7 19.73 198 8.24 --
448.05 0.986 4.86 -4.69 0.793 2.98 -- -9.01 -1.8 17.2 20.1 386 9.79 --
493.67 1.03 4.72 -3.46 1.49 2.51 -- -- -1.44 17.1 17.89 557 9.86 --
444.52 0.982 4.82 -4.48 -- 3.28 -- -8.93 -1.71 -- 17.39 368 11.8 --
525.1 1.07 4.69 -3.07 1.93 -- -3.99 -- -1.15 19.7 -- -- -- --
569.13 1.12 4.69 -2.97 1.92 -- -- -- -1.16 20 -- -- -- --
507.79 1.05 4.7 -3.43 -- 2.93 -- -- -1.42 -- 17.03 369 11.5 --
780.36 1.3 4.62 -- 2.21 2.35 -- -- -0.95 16.3 3.996 100 5.96 --
771.42 1.3 4.64 -2.99 -- -- -- -- -1.19 -- -- -- -- --
801.82 1.32 4.62 -- 1.94 -- -- -- -0.83 19.9 -- -- -- --
791.2 1.31 4.58 -- -- 2.29 -- -- -0.91 -- -0.8901 211 11.3 --
1007.23 1.48 4.57 -- -- -- -- -- -0.854 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 408.90 temperature 20 270 > th dose dependent rect. 14 18
7 416.35 temperature 20 720 > th dose dependent rect. 12 15
35 421.74 temperature 20 270 > th dose dependent sin 14 NA
41 422.43 temperature 20 720 > th dose dependent rect. 15 3
44 422.56 temperature 20 720 > th dose dependent sin 16 NA
67 424.99 temperature 20 90 > th dose dependent rect. 17 16
168 433.29 temperature 10 720 > th dose dependent rect. 12 15
172 433.63 temperature 10 720 > th dose dependent rect. 6 19
184 434.25 temperature 30 270 < th dose dependent rect. 11 17
220 435.89 wind 9 43200 > th dose dependent rect. 19 2
243 436.74 temperature 15 30 > th dose dependent rect. 21 23
263 437.60 temperature 10 720 > th dose dependent rect. 15 9
295 438.44 wind 9 43200 > th dose dependent rect. 18 4
331 439.22 wind 9 43200 < th dose independent rect. 18 3
361 439.96 humidity 50 14400 < th dose independent rect. 17 18
368 440.17 humidity 50 14400 > th dose independent rect. 16 19
391 440.61 humidity 60 14400 < th dose independent rect. 17 16
404 440.77 temperature 25 720 > th dose independent rect. 13 20
405 440.78 temperature 20 90 > th dose dependent rect. 17 11
408 440.85 wind 9 43200 > th dose independent rect. 18 4
436 441.28 temperature 30 10 < th dose dependent rect. 12 18
437 441.30 humidity 60 14400 < th dose dependent rect. 17 17
451 441.48 temperature 30 720 < th dose independent rect. 14 16
467 441.82 temperature 25 90 < th dose dependent rect. 11 22
511 442.60 temperature 25 720 > th dose independent rect. 13 11
512 442.60 wind 9 43200 > th dose dependent rect. 18 12
527 442.79 temperature 25 720 < th dose independent rect. 14 8
531 442.89 humidity 50 14400 > th dose independent rect. 17 17
569 443.41 temperature 20 720 > th dose dependent no NA NA
573 443.54 temperature 20 10 > th dose dependent rect. 15 19
588 443.65 wind 9 43200 > th dose dependent rect. 18 7
591 443.68 temperature 25 720 < th dose independent sin 18 NA
647 444.47 temperature 25 10 < th dose dependent rect. 13 23
650 444.49 temperature 20 720 > th dose dependent rect. 21 23
652 444.53 temperature 30 270 < th dose dependent rect. 15 13
670 444.73 wind 9 43200 > th dose independent rect. 18 7
695 445.11 temperature 20 720 > th dose dependent rect. 19 23
733 445.51 humidity 50 14400 < th dose independent sin 11 NA
734 445.53 temperature 25 720 > th dose independent sin 18 NA
737 445.57 temperature 30 720 < th dose dependent rect. 17 4
738 445.58 temperature 25 10 < th dose dependent rect. 1 23
746 445.68 wind 9 43200 > th dose independent rect. 18 12
758 445.84 humidity 60 14400 < th dose independent rect. 17 3
799 446.07 wind 9 43200 < th dose independent rect. 18 7
805 446.12 temperature 25 10 < th dose dependent rect. 11 23
807 446.13 temperature 25 10 < th dose dependent rect. 9 23
809 446.14 temperature 25 10 < th dose dependent rect. 10 20
817 446.20 temperature 30 30 < th dose dependent rect. 7 23
821 446.22 temperature 25 10 < th dose dependent rect. 19 23
822 446.25 temperature 25 720 < th dose independent rect. 9 21
828 446.31 temperature 25 720 < th dose independent rect. 11 19
837 446.39 temperature 25 10 < th dose dependent rect. 23 23
844 446.46 temperature 25 10 < th dose dependent no NA NA
855 446.53 temperature 30 720 > th dose independent rect. 14 4
863 446.58 temperature 30 270 < th dose dependent sin 15 NA
874 446.64 temperature 30 270 < th dose dependent rect. 17 11
883 446.70 wind 9 43200 < th dose independent rect. 18 10
897 446.81 temperature 20 720 > th dose dependent rect. 23 23
900 446.83 temperature 25 10 < th dose dependent rect. 15 23
902 446.87 temperature 25 10 < th dose dependent rect. 21 23
903 446.88 wind 9 43200 < th dose independent rect. 18 12
923 447.14 humidity 60 14400 < th dose dependent rect. 17 1
930 447.24 humidity 60 14400 > th dose independent rect. 17 3
932 447.29 temperature 25 10 < th dose dependent rect. 17 23
934 447.30 temperature 25 10 < th dose dependent rect. 5 23
958 447.48 temperature 25 30 < th dose dependent rect. 3 23
962 447.50 humidity 60 14400 > th dose independent rect. 17 7
983 447.62 humidity 60 14400 > th dose independent rect. 17 13