Os07g0265200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os07g0265200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 191.31 | 0.65 | 6.55 | 1.94 | 0.301 | -2.23 | -2.35 | 1.03 | 0.246 | 16.3 | 21.6 | 2283 | -- | -- |
| 193.67 | 0.648 | 6.59 | 1.65 | 0.3 | -2.27 | -2.33 | -- | 0.17 | 16.1 | 21.6 | 2283 | -- | -- |
| 204.91 | 0.667 | 6.55 | 1.95 | 0.314 | -2.22 | -- | 1.14 | 0.241 | 14.3 | 21.5 | 2288 | -- | -- |
| 207.74 | 0.671 | 6.59 | 1.63 | 0.317 | -2.29 | -- | -- | 0.165 | 14.4 | 21.55 | 2277 | -- | -- |
| 210.23 | 0.675 | 6.55 | 1.99 | -- | -2.26 | -- | 1.17 | 0.256 | -- | 21.55 | 2379 | -- | -- |
| 345.05 | 0.871 | 6.75 | 0.577 | 0.427 | -- | -2.39 | -- | -0.526 | 15.6 | -- | -- | -- | -- |
| 358.37 | 0.887 | 6.75 | 0.539 | 0.471 | -- | -- | -- | -0.541 | 13.3 | -- | -- | -- | -- |
| 213.22 | 0.68 | 6.59 | 1.66 | -- | -2.34 | -- | -- | 0.179 | -- | 21.56 | 2374 | -- | -- |
| 254.82 | 0.743 | 6.65 | -- | 0.359 | -1.64 | -- | -- | -0.0859 | 14 | 22.4 | 2078 | -- | -- |
| 372.04 | 0.901 | 6.75 | 0.52 | -- | -- | -- | -- | -0.55 | -- | -- | -- | -- | -- |
| 366.02 | 0.895 | 6.76 | -- | 0.462 | -- | -- | -- | -0.601 | 13.3 | -- | -- | -- | -- |
| 261.16 | 0.753 | 6.65 | -- | -- | -1.68 | -- | -- | -0.0735 | -- | 22.39 | 2229 | -- | -- |
| 379.19 | 0.909 | 6.77 | -- | -- | -- | -- | -- | -0.608 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 195.85 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 33 | 197.94 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 38 | 198.15 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 45 | 198.68 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 84 | 200.04 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 144 | 201.59 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 170 | 202.15 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 212 | 202.93 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 217 | 202.97 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 307 | 204.51 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 322 | 204.64 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 390 | 205.65 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 416 | 205.91 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 17 |
| 422 | 206.02 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 431 | 206.07 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 20 |
| 459 | 206.36 | temperature | 25 | 720 | < th | dose dependent | rect. | 2 | 19 |
| 481 | 206.60 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 494 | 206.75 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 526 | 207.12 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 559 | 207.46 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 595 | 207.92 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 596 | 207.92 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 624 | 208.25 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 694 | 208.91 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 695 | 208.92 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 12 |
| 836 | 210.23 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 841 | 210.27 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 859 | 210.46 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 892 | 210.77 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 958 | 211.45 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |