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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0263300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.25 (0.0462) R2 : 0.0833
β1 : -1.73 (0.283) R2dD : 0.253 R2D : -0.109
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.27 (0.237) R2dE : 0.203 R2E : -0.171
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.265 (0.12) R2dN8 : 0.0261 R2N8 : -0.0425
σ : 0.801
deviance : 295.43
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 18.7
memory length : 25613
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
279.43 0.785 3.38 -2.27 0.249 0.971 -0.511 -5.9 -0.408 8.74 26 4373 -- --
298.45 0.805 3.22 -0.959 0.156 0.753 -0.279 -- -0.101 9.21 21.1 6178 -- --
280.12 0.78 3.38 -2.26 0.247 1 -- -5.91 -0.4 9.03 26.1 4377 -- --
297.81 0.804 3.2 -1.19 0.184 0.943 -- -- -0.113 9.54 19.47 10920 -- --
283.65 0.784 3.38 -2.25 -- 0.981 -- -5.88 -0.398 -- 26.1 4382 -- --
309.86 0.825 3.15 -0.459 0.219 -- -0.6 -- 0.132 7.94 -- -- -- --
310.85 0.826 3.15 -0.474 0.219 -- -- -- 0.133 8.53 -- -- -- --
295.43 0.801 3.25 -1.73 -- 1.27 -- -- -0.265 -- 18.7 25613 -- --
314.38 0.826 3.15 -- 0.217 0.247 -- -- 0.0968 8.69 22.5 7040 -- --
313.53 0.827 3.15 -0.473 -- -- -- -- 0.135 -- -- -- -- --
316.77 0.833 3.13 -- 0.217 -- -- -- 0.186 8.69 -- -- -- --
312.42 0.823 3.17 -- -- 0.399 -- -- 0.0713 -- 22.2 1077 -- --
319.43 0.834 3.14 -- -- -- -- -- 0.188 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 274.51 humidity 60.0 43200 > th dose independent rect. 15 1
3 275.91 humidity 60.0 43200 < th dose independent rect. 15 1
4 276.48 humidity 60.0 43200 > th dose independent rect. 15 5
9 276.66 humidity 60.0 43200 > th dose independent rect. 15 8
19 277.18 humidity 60.0 43200 < th dose independent rect. 15 5
21 277.23 humidity 60.0 43200 < th dose independent rect. 15 9
22 277.24 radiation 30.0 14400 > th dose dependent rect. 16 16
27 277.35 precipitation 0.1 43200 > th dose independent rect. 8 1
28 277.35 precipitation 0.1 43200 > th dose dependent rect. 8 1
36 277.65 precipitation 0.1 43200 < th dose independent rect. 8 2
38 277.65 precipitation 0.1 43200 < th dose dependent rect. 8 2
52 278.06 radiation 40.0 43200 < th dose independent rect. 16 14
58 278.33 atmosphere 995.0 43200 < th dose independent rect. 22 3
59 278.33 atmosphere 995.0 43200 < th dose dependent rect. 22 3
63 278.34 atmosphere 995.0 43200 < th dose independent rect. 21 5
71 278.37 atmosphere 995.0 43200 > th dose independent rect. 21 5
76 278.39 atmosphere 995.0 43200 > th dose independent rect. 19 7
81 278.40 wind 1.0 14400 < th dose dependent rect. 22 5
101 278.50 temperature 25.0 14400 < th dose independent rect. 18 1
117 278.57 atmosphere 995.0 43200 > th dose independent rect. 21 11
130 278.63 atmosphere 995.0 43200 < th dose independent rect. 21 11
139 278.67 atmosphere 995.0 43200 > th dose independent rect. 21 1
149 278.69 radiation 30.0 14400 > th dose dependent rect. 7 1
166 278.74 atmosphere 995.0 43200 < th dose independent rect. 21 1
179 278.74 atmosphere 995.0 43200 < th dose dependent rect. 21 1
208 278.82 atmosphere 995.0 43200 > th dose independent rect. 19 3
217 278.87 temperature 25.0 14400 > th dose independent rect. 18 1
223 278.88 atmosphere 995.0 43200 < th dose dependent rect. 18 14
224 278.90 atmosphere 995.0 43200 < th dose dependent rect. 21 11
283 279.15 temperature 25.0 4320 > th dose independent rect. 10 1
288 279.19 temperature 25.0 4320 < th dose independent rect. 10 1
296 279.26 radiation 40.0 43200 < th dose independent rect. 16 4
306 279.32 atmosphere 995.0 43200 > th dose independent rect. 4 1
337 279.59 atmosphere 995.0 43200 < th dose independent rect. 1 1
363 279.59 radiation 40.0 43200 < th dose independent rect. 16 6
365 279.59 atmosphere 995.0 43200 < th dose dependent rect. 1 1
392 279.60 atmosphere 995.0 43200 > th dose independent rect. 1 1
393 279.60 humidity 60.0 43200 > th dose independent rect. 15 19
407 279.66 atmosphere 995.0 43200 < th dose dependent sin 12 NA
413 279.74 temperature 25.0 4320 < th dose independent rect. 17 3
421 279.84 humidity 60.0 43200 < th dose independent rect. 15 19
438 280.03 temperature 20.0 4320 > th dose dependent rect. 6 1
443 280.04 humidity 70.0 43200 < th dose dependent rect. 18 2
447 280.07 atmosphere 995.0 43200 > th dose independent sin 9 NA
459 280.16 atmosphere 995.0 43200 < th dose independent sin 9 NA
475 280.33 radiation 40.0 43200 < th dose independent rect. 16 8
488 280.41 temperature 20.0 4320 > th dose dependent rect. 4 3
498 280.47 temperature 25.0 4320 < th dose independent rect. 17 20
502 280.50 humidity 70.0 43200 < th dose independent rect. 18 1
507 280.55 humidity 60.0 43200 > th dose independent sin 18 NA
525 280.61 humidity 60.0 43200 < th dose independent sin 18 NA
527 280.61 humidity 60.0 43200 > th dose independent rect. 9 9
543 280.67 humidity 60.0 43200 > th dose independent rect. 14 21
544 280.67 wind 1.0 14400 < th dose dependent rect. 20 7
548 280.68 radiation 40.0 43200 < th dose independent rect. 16 1
551 280.69 temperature 25.0 4320 < th dose independent rect. 4 9
554 280.70 temperature 25.0 4320 > th dose independent rect. 17 21
559 280.72 temperature 20.0 14400 < th dose independent rect. 4 1
562 280.73 temperature 25.0 4320 < th dose independent rect. 6 6
583 280.81 temperature 20.0 14400 > th dose independent rect. 4 1
587 280.83 wind 7.0 43200 > th dose dependent rect. 11 1
606 280.88 humidity 60.0 43200 < th dose independent rect. 9 9
608 280.89 radiation 10.0 1440 < th dose independent rect. 16 14
612 280.91 temperature 25.0 4320 > th dose independent rect. 6 6
621 280.96 radiation 10.0 43200 < th dose independent rect. 8 2
663 281.04 radiation 40.0 43200 > th dose independent rect. 7 1
733 281.15 humidity 60.0 43200 < th dose independent rect. 9 15
760 281.22 radiation 10.0 43200 > th dose independent rect. 5 1
807 281.32 temperature 20.0 14400 > th dose dependent rect. 21 3
819 281.34 radiation 10.0 43200 < th dose independent rect. 11 19
837 281.38 temperature 20.0 14400 > th dose dependent rect. 23 1
859 281.46 radiation 10.0 43200 < th dose independent rect. 11 10
860 281.46 radiation 10.0 43200 < th dose independent rect. 11 12
862 281.46 temperature 25.0 4320 > th dose independent rect. 6 16
868 281.47 radiation 10.0 43200 < th dose independent rect. 11 8
897 281.49 wind 1.0 14400 < th dose dependent rect. 20 9
904 281.50 temperature 20.0 4320 > th dose dependent rect. 20 13
909 281.51 temperature 25.0 4320 > th dose independent rect. 1 21
916 281.52 temperature 25.0 4320 < th dose independent rect. 4 19
954 281.56 temperature 20.0 720 > th dose dependent rect. 19 15
993 281.63 radiation 10.0 43200 < th dose independent rect. 13 17