Os07g0262800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Resistance protein candidate (Fragment).
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Os07g0262800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Resistance protein candidate (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 173.63 | 0.619 | 8.44 | -0.382 | 3.59 | -3.68 | 0.758 | -2.09 | 0.504 | 19.6 | 25.16 | 6228 | -- | -- |
| 176.19 | 0.618 | 8.49 | -0.611 | 3.59 | -3.19 | 0.766 | -- | 0.483 | 19.6 | 26.63 | 6233 | -- | -- |
| 175.12 | 0.616 | 8.44 | -0.394 | 3.6 | -3.82 | -- | -2.45 | 0.49 | 19.6 | 24.81 | 6218 | -- | -- |
| 177.86 | 0.621 | 8.5 | -0.647 | 3.58 | -3.23 | -- | -- | 0.465 | 19.6 | 26.64 | 6226 | -- | -- |
| 786.03 | 1.31 | 8.41 | -0.404 | -- | -3.87 | -- | -0.824 | 0.319 | -- | 29.91 | 2093 | -- | -- |
| 328.47 | 0.85 | 8.32 | 1.02 | 3.62 | -- | 0.847 | -- | 1.28 | 19.7 | -- | -- | -- | -- |
| 330.51 | 0.851 | 8.32 | 1 | 3.62 | -- | -- | -- | 1.28 | 19.7 | -- | -- | -- | -- |
| 544.93 | 1.09 | 8.42 | -0.353 | -- | -5.64 | -- | -- | 0.4 | -- | 51.06 | 575 | -- | -- |
| 184.28 | 0.632 | 8.46 | -- | 3.61 | -2.75 | -- | -- | 0.675 | 19.6 | 31.05 | 6055 | -- | -- |
| 1035.81 | 1.5 | 8.23 | 0.954 | -- | -- | -- | -- | 1.23 | -- | -- | -- | -- | -- |
| 356.94 | 0.884 | 8.34 | -- | 3.61 | -- | -- | -- | 1.17 | 19.7 | -- | -- | -- | -- |
| 547.91 | 1.09 | 8.4 | -- | -- | -5.52 | -- | -- | 0.455 | -- | 58.49 | 569 | -- | -- |
| 1059.81 | 1.52 | 8.25 | -- | -- | -- | -- | -- | 1.12 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 167.07 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 12 | 169.15 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 23 | 170.24 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 25 | 173.20 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 27 | 173.58 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 5 |
| 31 | 173.65 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 39 | 174.56 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 14 |
| 75 | 175.32 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 78 | 175.59 | temperature | 20 | 720 | > th | dose dependent | sin | 12 | NA |
| 93 | 176.26 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 95 | 176.38 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 99 | 176.52 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 114 | 176.88 | temperature | 15 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 127 | 177.29 | radiation | 1 | 43200 | < th | dose dependent | sin | 15 | NA |
| 153 | 177.52 | temperature | 30 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 158 | 177.71 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 164 | 177.86 | radiation | 1 | 43200 | < th | dose dependent | rect. | 11 | 18 |
| 196 | 178.42 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 6 |
| 206 | 178.57 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 8 |
| 222 | 178.84 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 13 |
| 230 | 178.86 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 9 |
| 236 | 178.87 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 239 | 178.87 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 8 |
| 402 | 179.54 | radiation | 1 | 43200 | < th | dose independent | sin | 16 | NA |
| 403 | 179.54 | humidity | 80 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 422 | 179.62 | radiation | 40 | 4320 | < th | dose dependent | rect. | 18 | 6 |
| 428 | 179.63 | radiation | 1 | 43200 | < th | dose dependent | rect. | 16 | 20 |
| 447 | 179.72 | temperature | 30 | 720 | < th | dose dependent | sin | 13 | NA |
| 468 | 179.82 | humidity | 90 | 43200 | < th | dose independent | rect. | 16 | 7 |
| 526 | 180.03 | temperature | 15 | 4320 | > th | dose dependent | sin | 12 | NA |
| 543 | 180.09 | radiation | 1 | 43200 | > th | dose independent | sin | 16 | NA |
| 587 | 180.22 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 22 |
| 592 | 180.24 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 16 |
| 601 | 180.25 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 18 |
| 610 | 180.26 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 15 |
| 617 | 180.27 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 12 |
| 679 | 180.33 | radiation | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 684 | 180.33 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 21 |
| 710 | 180.39 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 6 |
| 711 | 180.39 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 22 |
| 714 | 180.40 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 717 | 180.41 | temperature | 30 | 4320 | < th | dose dependent | sin | 12 | NA |
| 721 | 180.43 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 12 |
| 746 | 180.47 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 9 |
| 769 | 180.55 | temperature | 10 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 865 | 180.79 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 20 |
| 884 | 180.84 | temperature | 20 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 924 | 180.98 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 949 | 181.04 | temperature | 30 | 4320 | < th | dose dependent | rect. | 4 | 1 |