Os07g0262600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os07g0262600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 109.69 | 0.492 | 3.26 | 0.62 | 0.514 | 0.658 | 0.616 | 1.6 | 0.803 | 20.9 | 64.74 | 7184 | -- | -- |
| 112.84 | 0.495 | 3.27 | 0.614 | 0.515 | 0.646 | 0.596 | -- | 0.815 | 20.8 | 67 | 7201 | -- | -- |
| 110.95 | 0.491 | 3.26 | 0.599 | 0.513 | 0.649 | -- | 1.57 | 0.804 | 20.8 | 64.39 | 7213 | -- | -- |
| 114 | 0.497 | 3.27 | 0.599 | 0.515 | 0.647 | -- | -- | 0.814 | 20.7 | 67 | 7202 | -- | -- |
| 125.9 | 0.523 | 3.25 | 0.597 | -- | 0.685 | -- | 1.48 | 0.797 | -- | 64 | 7214 | -- | -- |
| 118.94 | 0.511 | 3.27 | 0.715 | 0.521 | -- | 0.557 | -- | 0.808 | 20.7 | -- | -- | -- | -- |
| 119.96 | 0.513 | 3.27 | 0.697 | 0.52 | -- | -- | -- | 0.808 | 20.7 | -- | -- | -- | -- |
| 128.78 | 0.529 | 3.27 | 0.586 | -- | 0.671 | -- | -- | 0.781 | -- | 64 | 7213 | -- | -- |
| 122.82 | 0.516 | 3.27 | -- | 0.581 | 0.802 | -- | -- | 0.81 | 20.6 | 65 | 7924 | -- | -- |
| 135.25 | 0.543 | 3.26 | 0.696 | -- | -- | -- | -- | 0.804 | -- | -- | -- | -- | -- |
| 132.77 | 0.539 | 3.29 | -- | 0.518 | -- | -- | -- | 0.73 | 20.8 | -- | -- | -- | -- |
| 137.34 | 0.546 | 3.26 | -- | -- | 0.862 | -- | -- | 0.742 | -- | 66 | 7209 | -- | -- |
| 148.02 | 0.568 | 3.28 | -- | -- | -- | -- | -- | 0.726 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 107.17 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 21 | 1 |
| 8 | 107.17 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 21 | 1 |
| 27 | 107.66 | temperature | 25 | 30 | > th | dose dependent | rect. | 21 | 1 |
| 29 | 107.96 | humidity | 60 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 31 | 108.13 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 32 | 108.24 | humidity | 60 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 33 | 108.29 | wind | 3 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 34 | 108.32 | wind | 3 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 41 | 108.45 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 42 | 108.45 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 43 | 108.47 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 46 | 108.55 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 53 | 108.65 | temperature | 30 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 69 | 108.71 | humidity | 60 | 14400 | < th | dose independent | rect. | 14 | 20 |
| 70 | 108.73 | humidity | 80 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 71 | 108.73 | temperature | 30 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 88 | 108.78 | humidity | 60 | 14400 | > th | dose independent | rect. | 15 | 19 |
| 97 | 108.88 | temperature | 30 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 112 | 108.93 | temperature | 25 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 113 | 108.94 | temperature | 30 | 43200 | < th | dose independent | rect. | 1 | 8 |
| 114 | 108.95 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 119 | 108.98 | temperature | 30 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 121 | 108.98 | temperature | 30 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 126 | 109.00 | temperature | 30 | 43200 | < th | dose independent | rect. | 21 | 12 |
| 127 | 109.01 | temperature | 25 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 128 | 109.02 | temperature | 30 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 130 | 109.03 | temperature | 30 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 141 | 109.09 | humidity | 80 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 146 | 109.11 | humidity | 80 | 14400 | > th | dose dependent | rect. | 9 | 4 |
| 153 | 109.16 | humidity | 80 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 175 | 109.28 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 8 | 5 |
| 181 | 109.28 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 5 | 9 |
| 182 | 109.28 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 4 | 10 |
| 191 | 109.28 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 24 | 15 |
| 192 | 109.28 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 9 | 2 |
| 193 | 109.28 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 7 | 5 |
| 194 | 109.28 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 195 | 109.28 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 3 | 11 |
| 196 | 109.28 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 24 | 13 |
| 209 | 109.30 | atmosphere | 1015 | 14400 | > th | dose independent | sin | 4 | NA |
| 210 | 109.30 | atmosphere | 1015 | 14400 | < th | dose independent | sin | 4 | NA |
| 211 | 109.30 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 241 | 109.31 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 1 | 3 |
| 256 | 109.32 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 24 | 5 |
| 268 | 109.33 | atmosphere | 1015 | 14400 | > th | dose dependent | sin | 5 | NA |
| 279 | 109.34 | humidity | 80 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 287 | 109.35 | humidity | 60 | 14400 | < th | dose independent | rect. | 14 | 6 |
| 327 | 109.36 | humidity | 80 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 329 | 109.36 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 23 | 8 |
| 349 | 109.38 | humidity | 80 | 14400 | < th | dose independent | rect. | 11 | 3 |
| 367 | 109.38 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 19 | 19 |
| 373 | 109.38 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 18 | 20 |
| 376 | 109.38 | wind | 3 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 382 | 109.39 | humidity | 90 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 475 | 109.42 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 537 | 109.42 | temperature | 25 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 590 | 109.43 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 641 | 109.45 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 693 | 109.48 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 738 | 109.49 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 24 | 23 |
| 741 | 109.50 | atmosphere | 1015 | 14400 | < th | dose independent | no | NA | NA |
| 742 | 109.50 | humidity | 90 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 744 | 109.50 | wind | 9 | 14400 | > th | dose independent | rect. | 5 | 6 |
| 788 | 109.52 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 24 | 23 |
| 789 | 109.52 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 4 | 23 |
| 793 | 109.53 | atmosphere | 1015 | 14400 | > th | dose independent | no | NA | NA |
| 851 | 109.55 | humidity | 60 | 14400 | > th | dose independent | rect. | 15 | 11 |
| 935 | 109.57 | wind | 1 | 14400 | > th | dose dependent | rect. | 3 | 4 |
| 994 | 109.60 | humidity | 60 | 14400 | < th | dose dependent | rect. | 14 | 2 |