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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0260400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Phospholipase D nu-2 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.2 (0.0344) R2 : 0.00073
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0417 (0.0723) R2dN8 : 0.000942 R2N8 : 0.00073
σ : 0.647
deviance : 192.1
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
150.85 0.572 5.16 0.165 0.561 0.398 0.00621 -1.72 0.0939 16.3 20 10 -- --
162.55 0.598 5.19 -0.0621 0.596 0.633 0.533 -- 0.0297 16.3 19.2 20 -- --
150.84 0.572 5.16 0.168 0.562 0.398 -- -1.72 0.0969 16.3 19.99 9 -- --
162.77 0.594 5.19 -0.0452 0.604 0.656 -- -- 0.0391 16.2 19.25 20 -- --
167.17 0.602 5.16 0.135 -- 0.273 -- -1.85 0.0634 -- 19.92 13 -- --
174.41 0.619 5.21 -0.247 0.523 -- 0.675 -- -0.0608 16.9 -- -- -- --
175.58 0.621 5.21 -0.245 0.528 -- -- -- -0.0574 16.9 -- -- -- --
181.85 0.628 5.19 -0.112 -- 0.512 -- -- 0.00258 -- 19.27 20 -- --
162.82 0.594 5.19 -- 0.607 0.668 -- -- 0.0455 16.2 19.27 20 -- --
190.26 0.645 5.21 -0.264 -- -- -- -- -0.0711 -- -- -- -- --
177.16 0.623 5.21 -- 0.532 -- -- -- -0.0302 16.9 -- -- -- --
182.16 0.629 5.19 -- -- 0.538 -- -- 0.0178 -- 19.27 20 -- --
192.1 0.647 5.2 -- -- -- -- -- -0.0417 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 147.28 temperature 10 43200 > th dose independent rect. 9 5
2 147.69 temperature 20 10 > th dose independent rect. 11 21
13 149.68 temperature 10 43200 > th dose independent rect. 9 7
18 150.29 temperature 20 10 < th dose independent rect. 1 23
25 150.84 temperature 20 10 < th dose independent rect. 9 22
27 150.85 temperature 20 10 < th dose independent no NA NA
29 150.87 temperature 20 270 > th dose independent rect. 22 22
30 150.88 temperature 20 10 < th dose independent rect. 17 23
31 150.89 temperature 20 10 < th dose independent rect. 15 23
34 150.90 temperature 20 10 < th dose independent rect. 21 23
36 150.91 temperature 20 10 < th dose independent rect. 11 23
37 150.91 temperature 20 10 < th dose independent rect. 23 23
38 150.92 temperature 20 10 < th dose independent rect. 5 23
39 150.93 temperature 20 10 > th dose independent rect. 13 23
41 150.95 temperature 20 10 > th dose independent rect. 22 23
42 150.96 temperature 20 10 < th dose independent rect. 19 23
43 150.99 temperature 20 10 < th dose independent rect. 3 23
44 151.01 radiation 20 14400 < th dose independent rect. 18 13
47 151.04 temperature 20 10 > th dose independent no NA NA
48 151.08 temperature 20 10 < th dose independent rect. 13 23
53 151.13 radiation 20 14400 < th dose independent rect. 22 9
56 151.15 radiation 20 14400 < th dose independent rect. 24 7
58 151.19 wind 9 14400 < th dose independent rect. 5 4
64 151.23 radiation 20 14400 < th dose independent rect. 4 3
66 151.25 humidity 50 43200 > th dose dependent rect. 21 4
68 151.27 radiation 20 14400 < th dose independent rect. 6 1
81 151.34 humidity 50 43200 > th dose dependent rect. 22 1
92 151.38 humidity 80 43200 > th dose independent rect. 22 17
102 151.46 humidity 80 43200 < th dose independent rect. 22 17
106 151.50 radiation 1 14400 < th dose independent rect. 19 10
112 151.54 humidity 80 43200 > th dose independent rect. 21 19
113 151.54 temperature 20 270 < th dose independent rect. 21 23
132 151.64 humidity 80 43200 < th dose independent rect. 21 19
141 151.72 humidity 80 43200 > th dose independent rect. 24 1
147 151.74 humidity 80 43200 < th dose independent rect. 24 1
148 151.74 humidity 60 43200 > th dose dependent rect. 24 1
154 151.77 humidity 90 43200 < th dose dependent rect. 24 1
162 151.81 temperature 20 270 < th dose independent rect. 5 23
175 151.87 humidity 90 43200 < th dose dependent rect. 22 3
185 151.91 radiation 1 4320 > th dose independent rect. 9 2
189 151.92 radiation 1 14400 < th dose independent rect. 21 8
224 152.03 temperature 20 10 > th dose independent rect. 1 23
230 152.05 humidity 60 43200 < th dose independent rect. 18 6
238 152.07 wind 3 43200 < th dose dependent rect. 13 1
249 152.10 humidity 80 43200 > th dose independent sin 5 NA
259 152.13 temperature 20 270 > th dose independent no NA NA
261 152.14 temperature 15 14400 > th dose independent rect. 2 1
263 152.14 wind 3 43200 > th dose independent rect. 6 2
264 152.14 humidity 60 43200 > th dose independent rect. 18 7
267 152.15 temperature 15 14400 < th dose independent rect. 2 1
272 152.15 humidity 80 43200 < th dose dependent rect. 6 2
283 152.16 humidity 80 43200 < th dose dependent rect. 20 13
306 152.21 temperature 10 43200 > th dose independent rect. 9 11
319 152.23 humidity 70 43200 < th dose dependent rect. 19 2
336 152.27 humidity 60 43200 < th dose independent rect. 21 1
339 152.27 humidity 60 43200 < th dose dependent rect. 21 1
353 152.29 humidity 50 43200 > th dose independent rect. 21 4
365 152.31 humidity 50 43200 > th dose independent rect. 21 1
366 152.31 wind 3 43200 < th dose independent rect. 5 3
370 152.31 humidity 60 43200 < th dose dependent rect. 21 6
380 152.33 wind 1 43200 > th dose dependent rect. 6 1
382 152.33 radiation 20 14400 < th dose dependent rect. 19 10
386 152.34 temperature 20 270 < th dose independent no NA NA
395 152.34 humidity 60 43200 > th dose dependent sin 11 NA
399 152.35 humidity 50 43200 > th dose independent rect. 20 8
401 152.35 humidity 60 43200 < th dose dependent rect. 21 4
420 152.37 wind 9 43200 < th dose dependent rect. 6 1
441 152.41 wind 1 43200 > th dose independent rect. 6 8
444 152.41 temperature 20 270 < th dose independent rect. 13 23
463 152.43 temperature 20 10 > th dose independent rect. 5 23
481 152.45 humidity 50 43200 > th dose independent rect. 7 1
491 152.46 wind 9 14400 < th dose independent rect. 3 1
496 152.46 humidity 70 43200 < th dose independent rect. 20 14
508 152.47 humidity 60 43200 < th dose independent rect. 7 1
523 152.48 humidity 70 43200 > th dose independent rect. 19 14
529 152.48 temperature 15 14400 < th dose dependent rect. 4 1
532 152.48 wind 3 43200 < th dose dependent rect. 12 5
564 152.51 humidity 60 43200 < th dose independent rect. 18 14
615 152.56 radiation 1 14400 < th dose independent rect. 24 5
628 152.57 humidity 50 43200 < th dose independent rect. 16 19
650 152.58 humidity 80 43200 < th dose dependent rect. 4 5
667 152.60 humidity 50 43200 > th dose independent rect. 16 19
675 152.61 wind 9 14400 < th dose independent rect. 19 1
692 152.62 wind 5 43200 < th dose dependent rect. 4 4
695 152.63 humidity 80 43200 < th dose independent sin 5 NA
712 152.64 humidity 50 43200 < th dose independent rect. 21 7
738 152.66 humidity 80 43200 > th dose independent rect. 24 8
805 152.70 humidity 80 43200 < th dose independent rect. 23 9
819 152.71 temperature 20 10 > th dose independent rect. 15 23
832 152.72 wind 1 43200 > th dose independent rect. 12 2
841 152.72 wind 3 43200 < th dose dependent rect. 13 3
844 152.73 temperature 20 4320 < th dose independent rect. 9 1
950 152.79 wind 1 43200 < th dose dependent rect. 11 2
955 152.80 temperature 10 43200 > th dose independent rect. 18 2
975 152.81 humidity 80 43200 > th dose independent rect. 5 2
990 152.82 temperature 15 14400 > th dose independent sin 6 NA
991 152.82 temperature 15 14400 < th dose independent sin 7 NA