Os07g0260300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Thioredoxin-like domain containing protein.
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Os07g0260300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Thioredoxin-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.62 | 0.31 | 11.2 | 0.925 | 0.361 | 0.961 | 0.282 | -11 | -0.649 | 10.9 | 29.78 | 4030 | -- | -- |
| 56.35 | 0.35 | 11.4 | -0.606 | 0.322 | 0.453 | 0.244 | -- | -0.744 | 10.7 | 17.1 | 47520 | -- | -- |
| 43.92 | 0.309 | 11.2 | 0.938 | 0.357 | 0.969 | -- | -11 | -0.646 | 10.9 | 29.74 | 3991 | -- | -- |
| 55.05 | 0.346 | 11.4 | -0.57 | 0.36 | 0.467 | -- | -- | -0.763 | 10.4 | 14.59 | 47520 | -- | -- |
| 51.47 | 0.334 | 11.2 | 1.03 | -- | 1.02 | -- | -11 | -0.601 | -- | 29.7 | 3991 | -- | -- |
| 57.86 | 0.357 | 11.4 | -0.985 | 0.365 | -- | 0.163 | -- | -0.88 | 10.4 | -- | -- | -- | -- |
| 57.97 | 0.357 | 11.4 | -0.979 | 0.365 | -- | -- | -- | -0.88 | 10.4 | -- | -- | -- | -- |
| 63.01 | 0.37 | 11.4 | -0.574 | -- | 0.475 | -- | -- | -0.764 | -- | 14.4 | 47520 | -- | -- |
| 57.44 | 0.353 | 11.4 | -- | 0.357 | 0.862 | -- | -- | -0.613 | 10.4 | 16.2 | 47520 | -- | -- |
| 66.1 | 0.38 | 11.4 | -0.985 | -- | -- | -- | -- | -0.881 | -- | -- | -- | -- | -- |
| 83.21 | 0.427 | 11.4 | -- | 0.371 | -- | -- | -- | -0.771 | 10.6 | -- | -- | -- | -- |
| 65.28 | 0.376 | 11.4 | -- | -- | 0.871 | -- | -- | -0.609 | -- | 16.34 | 47520 | -- | -- |
| 91.67 | 0.447 | 11.4 | -- | -- | -- | -- | -- | -0.772 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.41 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 3 | 41.78 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 4 | 41.85 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 5 |
| 6 | 42.09 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 5 |
| 10 | 42.59 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 15 | 42.77 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 18 | 42.91 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 34 | 43.97 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 6 |
| 36 | 44.02 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 8 | 3 |
| 38 | 44.06 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 50 | 44.24 | wind | 1.0 | 43200 | < th | dose independent | rect. | 23 | 8 |
| 52 | 44.27 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 53 | 44.28 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 11 |
| 55 | 44.30 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 62 | 44.36 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 9 |
| 84 | 44.52 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 104 | 44.61 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 108 | 44.62 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 110 | 44.62 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 118 | 44.65 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 129 | 44.72 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 131 | 44.72 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 139 | 44.75 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 195 | 44.91 | temperature | 20.0 | 14400 | > th | dose dependent | sin | 0 | NA |
| 196 | 44.91 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 207 | 44.93 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 209 | 44.93 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 228 | 44.98 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 242 | 45.01 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 10 | 6 |
| 268 | 45.06 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 5 | 11 |
| 270 | 45.06 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 24 | 16 |
| 271 | 45.06 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 22 | 18 |
| 272 | 45.06 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 20 | 20 |
| 290 | 45.08 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 11 |
| 294 | 45.09 | wind | 3.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 295 | 45.09 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 309 | 45.12 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 13 | 2 |
| 312 | 45.13 | wind | 3.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 332 | 45.16 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 409 | 45.30 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 6 | 7 |
| 456 | 45.34 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 6 | 12 |
| 462 | 45.34 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 23 | 19 |
| 529 | 45.43 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 10 | 6 |
| 543 | 45.45 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 11 |
| 544 | 45.45 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 11 |
| 547 | 45.45 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 11 |
| 557 | 45.47 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 13 | 2 |
| 634 | 45.53 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 13 | 23 |
| 636 | 45.53 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 690 | 45.57 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 18 | 20 |
| 735 | 45.59 | temperature | 30.0 | 4320 | < th | dose independent | sin | 1 | NA |
| 769 | 45.62 | temperature | 20.0 | 14400 | > th | dose dependent | no | NA | NA |
| 780 | 45.63 | humidity | 70.0 | 1440 | > th | dose independent | sin | 2 | NA |
| 782 | 45.63 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 10 | 8 |
| 787 | 45.63 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 19 | 23 |
| 800 | 45.64 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 23 |
| 803 | 45.65 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 3 | 11 |
| 823 | 45.66 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 23 | 15 |
| 827 | 45.66 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 16 | 22 |
| 858 | 45.68 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 8 | 10 |
| 876 | 45.69 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 6 | 12 |
| 896 | 45.69 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 12 | 23 |
| 927 | 45.72 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 10 | 11 |
| 928 | 45.72 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 10 | 13 |
| 929 | 45.72 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 10 | 15 |
| 932 | 45.72 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 10 | 20 |