Os07g0260000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os07g0260000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 156.68 | 0.588 | 5.88 | 0.73 | 0.591 | -0.637 | 0.189 | 3.75 | 0.707 | 18.2 | 22.53 | 1259 | -- | -- |
| 162.22 | 0.593 | 5.97 | 0.0574 | 0.598 | -0.671 | 0.0757 | -- | 0.585 | 17.9 | 10.68 | 18770 | -- | -- |
| 156.75 | 0.583 | 5.89 | 0.717 | 0.593 | -0.631 | -- | 3.71 | 0.705 | 18.2 | 22.4 | 1244 | -- | -- |
| 162.23 | 0.593 | 5.97 | 0.0645 | 0.599 | -0.685 | -- | -- | 0.596 | 17.9 | 10.02 | 18774 | -- | -- |
| 174.77 | 0.616 | 5.87 | 0.707 | -- | -0.682 | -- | 3.64 | 0.698 | -- | 22.57 | 1283 | -- | -- |
| 169.22 | 0.61 | 6.03 | -0.465 | 0.606 | -- | 0.119 | -- | 0.332 | 17.9 | -- | -- | -- | -- |
| 169.25 | 0.609 | 6.03 | -0.465 | 0.607 | -- | -- | -- | 0.332 | 17.9 | -- | -- | -- | -- |
| 180.82 | 0.626 | 5.96 | 0.0639 | -- | -0.712 | -- | -- | 0.593 | -- | 1.242 | 18632 | -- | -- |
| 162.29 | 0.593 | 5.97 | -- | 0.6 | -0.643 | -- | -- | 0.577 | 17.9 | 10.05 | 18765 | -- | -- |
| 188.32 | 0.641 | 6.02 | -0.484 | -- | -- | -- | -- | 0.318 | -- | -- | -- | -- | -- |
| 174.96 | 0.619 | 6.02 | -- | 0.614 | -- | -- | -- | 0.384 | 17.8 | -- | -- | -- | -- |
| 180.87 | 0.626 | 5.96 | -- | -- | -0.669 | -- | -- | 0.573 | -- | 8.948 | 18626 | -- | -- |
| 194.5 | 0.651 | 6.01 | -- | -- | -- | -- | -- | 0.372 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 154.88 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 9 | 155.57 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 12 | 155.62 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 19 | 155.80 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 21 | 155.81 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 24 | 155.85 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 25 | 155.85 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 33 | 155.98 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 15 | 10 |
| 38 | 156.03 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 43 | 156.07 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 12 | 14 |
| 50 | 156.12 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 17 | 6 |
| 51 | 156.13 | humidity | 90.0 | 43200 | < th | dose independent | sin | 17 | NA |
| 54 | 156.13 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 64 | 156.23 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 65 | 156.23 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 76 | 156.29 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 87 | 156.33 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 7 | 19 |
| 89 | 156.34 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 5 | 22 |
| 92 | 156.34 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 9 | 16 |
| 96 | 156.37 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 15 | 10 |
| 106 | 156.39 | humidity | 80.0 | 43200 | > th | dose dependent | sin | 18 | NA |
| 107 | 156.39 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 23 | 7 |
| 138 | 156.44 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 12 | 14 |
| 141 | 156.45 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 17 | 23 |
| 143 | 156.46 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 11 | 15 |
| 155 | 156.48 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 14 | 23 |
| 158 | 156.49 | humidity | 90.0 | 43200 | < th | dose independent | no | NA | NA |
| 166 | 156.50 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 9 | 23 |
| 185 | 156.52 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 11 | 23 |
| 219 | 156.56 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 19 | 21 |
| 229 | 156.57 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 18 | 19 |
| 233 | 156.57 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 15 | 22 |
| 255 | 156.59 | humidity | 90.0 | 43200 | > th | dose dependent | sin | 16 | NA |
| 256 | 156.59 | humidity | 90.0 | 43200 | > th | dose dependent | no | NA | NA |
| 273 | 156.60 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 23 |
| 277 | 156.61 | humidity | 90.0 | 43200 | > th | dose independent | sin | 17 | NA |
| 316 | 156.64 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 5 | 22 |
| 352 | 156.68 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 370 | 156.70 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 385 | 156.71 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 408 | 156.73 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 437 | 156.77 | humidity | 90.0 | 43200 | > th | dose dependent | sin | 5 | NA |
| 443 | 156.78 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 18 | 22 |
| 455 | 156.79 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 17 | 20 |
| 469 | 156.80 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 15 | 22 |
| 504 | 156.84 | humidity | 90.0 | 43200 | > th | dose independent | no | NA | NA |
| 505 | 156.84 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 519 | 156.85 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 13 |
| 525 | 156.85 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 8 | 23 |
| 534 | 156.86 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 11 | 23 |
| 561 | 156.89 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 1 | 23 |
| 599 | 156.93 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 17 | 13 |
| 605 | 156.93 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 636 | 156.97 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 653 | 156.98 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 12 | 8 |
| 676 | 157.00 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 682 | 157.01 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 759 | 157.06 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 809 | 157.10 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 3 | 8 |
| 829 | 157.12 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 13 | 5 |
| 849 | 157.13 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 13 | 2 |
| 888 | 157.17 | radiation | 1.0 | 43200 | > th | dose independent | sin | 10 | NA |
| 889 | 157.17 | radiation | 1.0 | 43200 | < th | dose independent | sin | 10 | NA |
| 895 | 157.17 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 8 |
| 903 | 157.17 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 958 | 157.21 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 12 | 8 |
| 969 | 157.22 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 976 | 157.22 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 4 | 5 |
| 986 | 157.23 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 13 | 6 |