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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0259400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.04 (0.0372) R2 : 0.695
β1 : 0.784 (0.136) R2dD : 0.023 R2D : 0.00718
β2 : 2.9 (0.0936) R2dC : 0.646 R2C : 0.623
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.661 (0.0792) R2dN8 : 0.0622 R2N8 : 0.0271
σ : 0.698
deviance : 222.27
__
_____
C
peak time of C : 20.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
198.46 0.662 4.04 0.596 2.7 0.981 1.36 -1.32 0.697 20.7 30 308 -- --
198.6 0.656 4.02 0.712 2.7 0.837 1.3 -- 0.716 20.7 30 307 -- --
204.34 0.666 4.04 0.594 2.68 0.97 -- -0.686 0.701 20.7 30 314 -- --
204.32 0.666 4.03 0.657 2.68 0.899 -- -- 0.706 20.7 30.1 321 -- --
492.2 1.03 4.06 0.408 -- 1.9 -- 0.889 0.162 -- 26.23 622 -- --
213.71 0.685 4.04 0.833 2.9 -- 1.65 -- 0.66 20.4 -- -- -- --
222.27 0.698 4.04 0.784 2.9 -- -- -- 0.661 20.4 -- -- -- --
491.72 1.03 4.09 0.156 -- 2.02 -- -- 0.0811 -- 26.27 634 -- --
215.4 0.684 4.04 -- 2.65 1 -- -- 0.643 20.7 30.01 320 -- --
689.93 1.23 3.97 0.767 -- -- -- -- 0.631 -- -- -- -- --
238.45 0.722 4.06 -- 2.9 -- -- -- 0.573 20.4 -- -- -- --
492.33 1.03 4.1 -- -- 2.04 -- -- 0.0579 -- 26.26 634 -- --
705.46 1.24 3.99 -- -- -- -- -- 0.545 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 183.75 temperature 10.0 30 > th dose dependent rect. 13 7
6 185.10 atmosphere 1015.0 10 < th dose dependent rect. 13 7
8 185.27 temperature 20.0 30 > th dose dependent rect. 13 17
12 185.60 temperature 15.0 10 > th dose independent rect. 20 17
25 186.56 wind 7.0 30 < th dose independent rect. 13 7
26 186.57 temperature 10.0 90 > th dose dependent rect. 13 20
36 186.87 temperature 30.0 270 < th dose independent rect. 16 21
59 187.75 temperature 30.0 270 < th dose independent rect. 17 19
66 187.95 wind 1.0 10 > th dose independent rect. 13 7
72 188.34 precipitation 0.1 10 < th dose independent rect. 20 17
73 188.34 precipitation 0.1 10 < th dose dependent rect. 20 17
83 188.58 precipitation 0.1 10 < th dose independent rect. 13 7
84 188.58 precipitation 0.1 10 < th dose dependent rect. 13 7
87 188.84 temperature 10.0 10 > th dose independent rect. 13 7
89 188.84 atmosphere 1010.0 10 < th dose independent rect. 13 7
92 188.84 atmosphere 995.0 10 > th dose independent rect. 20 17
100 188.89 temperature 10.0 1440 > th dose independent rect. 14 7
103 188.89 temperature 10.0 1440 > th dose independent rect. 21 17
106 188.89 atmosphere 995.0 1440 > th dose independent rect. 21 17
115 189.06 wind 9.0 30 < th dose independent rect. 20 17
143 189.49 wind 9.0 90 < th dose dependent rect. 13 6
144 189.55 temperature 30.0 270 < th dose independent rect. 8 15
158 189.72 temperature 25.0 30 > th dose dependent rect. 13 11
195 190.20 humidity 50.0 10 > th dose independent rect. 20 17
199 190.24 temperature 10.0 270 > th dose dependent rect. 11 21
205 190.29 temperature 30.0 90 < th dose independent rect. 10 15
224 190.53 wind 7.0 90 < th dose independent rect. 13 20
242 190.71 humidity 60.0 270 > th dose independent rect. 16 21
269 190.92 humidity 90.0 90 < th dose independent rect. 19 18
292 191.14 atmosphere 995.0 270 > th dose dependent rect. 23 8
293 191.15 atmosphere 1015.0 30 < th dose independent rect. 20 17
315 191.43 temperature 15.0 270 > th dose independent rect. 17 8
321 191.50 atmosphere 995.0 30 > th dose independent rect. 13 7
333 191.57 temperature 30.0 270 < th dose independent rect. 16 9
347 191.71 temperature 25.0 90 > th dose independent rect. 13 6
398 191.96 temperature 25.0 10 > th dose independent rect. 13 7
412 192.05 wind 7.0 270 < th dose independent rect. 12 18
415 192.07 temperature 30.0 270 < th dose independent rect. 6 7
420 192.10 temperature 25.0 10 > th dose dependent rect. 4 2
422 192.11 wind 1.0 90 > th dose independent rect. 9 4
434 192.16 temperature 15.0 270 > th dose independent rect. 8 15
458 192.27 wind 7.0 270 < th dose independent rect. 11 21
469 192.31 temperature 10.0 90 > th dose independent rect. 9 4
470 192.31 atmosphere 995.0 90 > th dose independent rect. 9 4
471 192.31 atmosphere 1015.0 90 < th dose independent rect. 9 4
472 192.31 temperature 10.0 90 > th dose independent rect. 13 20
474 192.32 precipitation 0.1 90 < th dose independent rect. 9 4
477 192.32 precipitation 0.1 90 < th dose dependent rect. 9 4
492 192.45 wind 9.0 270 < th dose independent rect. 10 23
503 192.51 temperature 25.0 10 > th dose independent rect. 4 2
505 192.52 wind 9.0 90 < th dose independent rect. 9 4
508 192.55 temperature 10.0 270 > th dose dependent rect. 13 3
524 192.65 radiation 1.0 90 > th dose independent rect. 9 4
556 192.86 humidity 50.0 270 > th dose independent rect. 16 9
578 193.03 radiation 40.0 270 < th dose independent rect. 8 15
593 193.13 temperature 30.0 270 < th dose independent rect. 8 3
602 193.15 humidity 60.0 90 > th dose independent rect. 10 15
606 193.17 radiation 40.0 270 < th dose independent rect. 18 18
657 193.44 humidity 90.0 270 < th dose independent rect. 18 5
662 193.46 humidity 90.0 30 < th dose independent rect. 22 15
672 193.50 atmosphere 995.0 90 > th dose dependent rect. 1 8
698 193.56 wind 5.0 270 < th dose independent rect. 23 9
704 193.59 wind 1.0 90 > th dose independent rect. 19 18
721 193.68 humidity 50.0 10 > th dose independent rect. 13 7
733 193.71 radiation 10.0 270 < th dose independent rect. 16 9
735 193.71 wind 9.0 270 < th dose independent rect. 1 16
739 193.72 radiation 20.0 270 < th dose dependent rect. 16 9
750 193.74 temperature 25.0 10 > th dose independent rect. 13 17
765 193.82 humidity 60.0 270 > th dose independent rect. 8 15
779 193.87 humidity 90.0 90 < th dose independent rect. 9 4
785 193.89 wind 9.0 270 < th dose dependent rect. 23 9
789 193.91 precipitation 0.1 90 < th dose independent rect. 13 20
790 193.91 precipitation 0.1 90 < th dose dependent rect. 13 20
809 193.97 temperature 10.0 270 > th dose independent rect. 23 9
810 193.97 temperature 30.0 270 < th dose independent rect. 23 9
811 193.97 humidity 50.0 270 > th dose independent rect. 23 9
813 193.97 atmosphere 995.0 270 > th dose independent rect. 23 9
814 193.97 radiation 40.0 270 < th dose independent rect. 23 9
833 194.05 humidity 60.0 90 > th dose independent rect. 9 4
839 194.07 humidity 90.0 90 < th dose independent rect. 13 6
847 194.11 wind 1.0 90 > th dose independent rect. 5 8
890 194.22 radiation 40.0 30 < th dose independent rect. 13 7
893 194.23 wind 1.0 10 > th dose independent rect. 10 3
961 194.45 temperature 10.0 10 > th dose independent rect. 10 3
963 194.45 atmosphere 995.0 10 > th dose independent rect. 10 3
964 194.45 atmosphere 1015.0 10 < th dose independent rect. 10 3
965 194.45 precipitation 0.1 10 < th dose independent rect. 10 3
966 194.45 temperature 10.0 10 > th dose independent rect. 13 21
967 194.45 precipitation 0.1 10 < th dose dependent rect. 10 3
977 194.49 atmosphere 1015.0 90 < th dose independent rect. 13 20
979 194.50 precipitation 0.1 270 < th dose independent rect. 6 6
984 194.50 precipitation 0.1 270 < th dose dependent rect. 6 6
986 194.51 radiation 1.0 10 > th dose independent rect. 10 3
989 194.52 temperature 10.0 270 > th dose independent rect. 6 6
990 194.52 atmosphere 995.0 270 > th dose independent rect. 6 6
991 194.52 atmosphere 1015.0 270 < th dose independent rect. 6 6
992 194.52 temperature 10.0 270 > th dose independent rect. 12 18
995 194.54 temperature 25.0 90 > th dose independent rect. 2 3
998 194.55 radiation 40.0 270 < th dose independent rect. 7 5
1000 194.56 atmosphere 995.0 270 > th dose independent rect. 8 15