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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0259000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.11 (0.0433) R2 : 0.312
β1 : 0.514 (0.158) R2dD : 0.0166 R2D : 0.0284
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.22 (0.391) R2dE : 0.125 R2E : 0.211
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 9.48 (1.44) R2dD*E : 0.0782 R2D*E : 0.158
γ1 : -0.0668 (0.0937) R2dN8 : 0.0011 R2N8 : 0.00502
σ : 0.807
deviance : 300.24
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 90.31
memory length : 1494
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.89
open length of G : 0.796

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
296.61 0.809 3.1 0.528 0.254 3.18 -0.124 8.97 -0.0585 15 90.27 1488 2.88 0.784
322.85 0.837 3.11 0.565 0.358 3.73 -0.204 -- -0.108 15.5 89.49 1472 3.02 0.7
296.48 0.802 3.11 0.525 0.258 3.32 -- 9.41 -0.0613 15.1 90.23 1495 2.88 0.789
320.36 0.834 3.11 0.502 0.301 4.52 -- -- -0.098 15.7 89.05 1485 3.04 0.667
300.24 0.807 3.11 0.514 -- 3.22 -- 9.48 -0.0668 -- 90.31 1494 2.89 0.796
417.25 0.958 3.14 0.658 0.214 -- -0.351 -- -0.171 14.1 -- -- -- --
417.63 0.957 3.14 0.647 0.213 -- -- -- -0.174 13.4 -- -- -- --
323.43 0.838 3.12 0.532 -- 4.92 -- -- -0.0506 -- 89.16 1545 3.17 0.533
325.57 0.84 3.13 -- 0.279 5.3 -- -- -0.0897 15.9 88.66 1540 3.22 0.497
420.43 0.958 3.15 0.639 -- -- -- -- -0.178 -- -- -- -- --
428.67 0.969 3.16 -- 0.202 -- -- -- -0.246 13.3 -- -- -- --
329.81 0.846 3.13 -- -- 5.05 -- -- -0.103 -- 89.22 1535 3.24 0.469
431.19 0.969 3.16 -- -- -- -- -- -0.249 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 302.51 humidity 90.0 1440 < th dose dependent rect. 3 1
2 304.51 wind 5.0 4320 > th dose dependent rect. 19 4
6 307.43 wind 5.0 4320 > th dose independent rect. 21 1
12 310.73 wind 7.0 4320 < th dose independent rect. 18 4
13 310.83 wind 7.0 4320 < th dose independent rect. 18 9
14 310.99 wind 7.0 4320 < th dose independent rect. 18 7
32 313.72 wind 7.0 4320 > th dose independent rect. 18 4
33 313.73 humidity 90.0 1440 < th dose dependent rect. 2 4
40 314.94 wind 7.0 4320 > th dose independent rect. 18 7
41 314.94 wind 7.0 4320 > th dose independent rect. 18 9
52 316.36 wind 7.0 4320 > th dose dependent rect. 18 9
54 316.45 atmosphere 995.0 14400 > th dose independent rect. 17 1
60 316.71 atmosphere 995.0 14400 < th dose independent rect. 16 1
61 316.74 atmosphere 995.0 14400 < th dose independent rect. 16 3
65 316.75 atmosphere 995.0 14400 < th dose dependent rect. 16 1
66 316.77 atmosphere 995.0 14400 < th dose dependent rect. 16 3
110 318.31 humidity 90.0 1440 < th dose dependent rect. 5 1
123 319.08 atmosphere 995.0 14400 > th dose independent rect. 13 6
158 319.28 atmosphere 995.0 14400 > th dose independent rect. 10 9
166 319.42 humidity 50.0 1440 > th dose dependent rect. 5 1
192 319.71 humidity 70.0 1440 > th dose dependent rect. 3 1
243 320.57 humidity 70.0 1440 > th dose dependent rect. 2 4
443 325.80 humidity 80.0 1440 < th dose independent rect. 22 2
525 330.26 temperature 20.0 1440 > th dose independent rect. 18 1
547 330.91 radiation 1.0 14400 < th dose dependent rect. 23 2
552 331.17 humidity 90.0 1440 > th dose independent rect. 5 1
582 332.27 humidity 80.0 90 < th dose independent rect. 21 10
592 332.72 humidity 80.0 1440 < th dose dependent rect. 22 1
619 333.55 humidity 90.0 1440 < th dose independent rect. 5 1
645 334.45 humidity 80.0 270 < th dose dependent rect. 21 10
687 335.16 atmosphere 995.0 14400 > th dose independent rect. 24 16
691 335.27 atmosphere 995.0 14400 < th dose independent sin 22 NA
693 335.32 atmosphere 995.0 14400 > th dose independent sin 22 NA
700 335.48 atmosphere 995.0 14400 > th dose independent rect. 19 21
704 335.70 atmosphere 995.0 14400 < th dose dependent sin 1 NA
720 335.95 radiation 1.0 14400 < th dose dependent rect. 19 7
744 336.51 atmosphere 995.0 14400 > th dose independent sin 4 NA
745 336.51 temperature 20.0 720 < th dose independent rect. 18 1
763 336.62 radiation 1.0 14400 < th dose dependent rect. 19 9
764 336.63 humidity 80.0 1440 > th dose independent rect. 22 5
770 336.68 humidity 80.0 1440 > th dose independent rect. 22 9
781 336.71 humidity 80.0 10 < th dose independent rect. 20 11
822 337.00 atmosphere 995.0 14400 < th dose independent sin 4 NA
826 337.02 humidity 80.0 1440 < th dose independent rect. 22 9
836 337.13 humidity 90.0 1440 < th dose independent rect. 2 4
851 337.15 atmosphere 1000.0 14400 < th dose dependent rect. 8 1
881 337.62 precipitation 0.1 14400 > th dose dependent rect. 20 1
885 337.66 atmosphere 1000.0 14400 < th dose dependent rect. 20 1
928 338.06 temperature 20.0 4320 < th dose independent rect. 21 1
970 338.37 humidity 80.0 270 < th dose dependent rect. 23 8