Os07g0258100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF544 family protein.
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Os07g0258100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF544 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 311.31 | 0.829 | 8.82 | -0.335 | 1.35 | -1.68 | 0.692 | -0.246 | 0.533 | 17.6 | 25.31 | 248 | -- | -- |
| 311.37 | 0.822 | 8.82 | -0.362 | 1.33 | -1.63 | 0.746 | -- | 0.528 | 17.6 | 25.58 | 249 | -- | -- |
| 312.31 | 0.823 | 8.81 | -0.296 | 1.33 | -1.68 | -- | -0.488 | 0.54 | 17.6 | 25.6 | 249 | -- | -- |
| 312.68 | 0.824 | 8.82 | -0.366 | 1.33 | -1.63 | -- | -- | 0.524 | 17.6 | 25.7 | 249 | -- | -- |
| 364.72 | 0.889 | 8.84 | -0.595 | -- | -2.55 | -- | -0.353 | 0.337 | -- | 29.54 | 267 | -- | -- |
| 351.41 | 0.879 | 8.75 | 0.0504 | 1.6 | -- | 0.656 | -- | 0.868 | 17.3 | -- | -- | -- | -- |
| 352.46 | 0.879 | 8.75 | 0.0497 | 1.61 | -- | -- | -- | 0.871 | 17.3 | -- | -- | -- | -- |
| 364.68 | 0.889 | 8.84 | -0.617 | -- | -2.59 | -- | -- | 0.325 | -- | 29.6 | 270 | -- | -- |
| 316.01 | 0.828 | 8.81 | -- | 1.36 | -1.49 | -- | -- | 0.589 | 17.5 | 25.7 | 250 | -- | -- |
| 487.4 | 1.03 | 8.73 | -0.00575 | -- | -- | -- | -- | 0.831 | -- | -- | -- | -- | -- |
| 352.53 | 0.878 | 8.75 | -- | 1.61 | -- | -- | -- | 0.866 | 17.3 | -- | -- | -- | -- |
| 374.25 | 0.901 | 8.82 | -- | -- | -2.39 | -- | -- | 0.43 | -- | 29.7 | 265 | -- | -- |
| 487.4 | 1.03 | 8.73 | -- | -- | -- | -- | -- | 0.832 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 296.30 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 19 |
| 12 | 303.90 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 13 | 303.94 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 21 | 304.79 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 16 |
| 49 | 307.43 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 22 |
| 51 | 307.68 | temperature | 20 | 270 | > th | dose independent | rect. | 8 | 19 |
| 62 | 308.52 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 18 |
| 65 | 308.74 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 20 |
| 68 | 308.92 | temperature | 25 | 270 | < th | dose dependent | rect. | 2 | 22 |
| 134 | 310.91 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 10 |
| 152 | 311.38 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 7 |
| 162 | 311.64 | temperature | 25 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 171 | 311.79 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 249 | 313.29 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 16 |
| 276 | 313.88 | temperature | 30 | 270 | < th | dose dependent | sin | 9 | NA |
| 331 | 314.89 | temperature | 10 | 270 | > th | dose dependent | sin | 9 | NA |
| 337 | 315.07 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 366 | 315.49 | temperature | 20 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 374 | 315.56 | humidity | 50 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 378 | 315.60 | temperature | 15 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 435 | 316.19 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 18 |
| 460 | 316.40 | wind | 9 | 14400 | < th | dose independent | rect. | 6 | 6 |
| 475 | 316.48 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 14 |
| 484 | 316.56 | temperature | 15 | 30 | > th | dose dependent | rect. | 21 | 9 |
| 489 | 316.61 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 21 |
| 511 | 316.77 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 10 |
| 515 | 316.79 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 18 |
| 530 | 316.86 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 546 | 316.91 | humidity | 90 | 30 | < th | dose independent | rect. | 6 | 3 |
| 553 | 316.95 | wind | 9 | 14400 | > th | dose independent | rect. | 6 | 6 |
| 632 | 317.19 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 647 | 317.23 | wind | 9 | 14400 | > th | dose independent | rect. | 9 | 3 |
| 650 | 317.23 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 665 | 317.25 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 688 | 317.30 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 689 | 317.31 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 695 | 317.32 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 20 |
| 755 | 317.46 | temperature | 20 | 4320 | < th | dose dependent | sin | 9 | NA |
| 794 | 317.55 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 882 | 317.73 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 910 | 317.80 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 7 |
| 922 | 317.83 | radiation | 1 | 90 | > th | dose dependent | rect. | 5 | 3 |
| 935 | 317.84 | wind | 9 | 1440 | < th | dose independent | rect. | 7 | 3 |
| 985 | 317.99 | wind | 9 | 14400 | > th | dose dependent | rect. | 6 | 7 |