Os07g0257200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to OsNramp1 (Integral membrane protein).
FiT-DB / Search/ Help/ Sample detail
|
Os07g0257200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to OsNramp1 (Integral membrane protein).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 526.15 | 1.08 | 7.03 | -6.01 | 4.58 | 2.7 | 1.07 | -22.9 | -0.786 | 5.69 | 26.8 | 4720 | -- | -- |
| 619.56 | 1.17 | 6.39 | -0.561 | 4.24 | -0.965 | 0.97 | -- | 0.127 | 5.89 | 26.8 | 4720 | -- | -- |
| 528.79 | 1.07 | 7.03 | -6.03 | 4.6 | 2.76 | -- | -23.4 | -0.77 | 5.68 | 26.93 | 4762 | -- | -- |
| 562.81 | 1.1 | 6.36 | 1.14 | 4.46 | -1.73 | -- | -- | 0.335 | 5.7 | 34.63 | 47520 | -- | -- |
| 1384.13 | 1.74 | 6.48 | -0.848 | -- | -2.78 | -- | -6.11 | 0.327 | -- | 24.2 | 4339 | -- | -- |
| 632.5 | 1.18 | 6.39 | -0.683 | 4.45 | -- | 1.24 | -- | 0.114 | 5.72 | -- | -- | -- | -- |
| 636.29 | 1.18 | 6.39 | -0.676 | 4.46 | -- | -- | -- | 0.109 | 5.71 | -- | -- | -- | -- |
| 1404.83 | 1.75 | 6.39 | -0.0693 | -- | -3.23 | -- | -- | 0.554 | -- | 24.2 | 4339 | -- | -- |
| 578.36 | 1.12 | 6.34 | -- | 4.46 | -1.14 | -- | -- | 0.359 | 5.69 | 33.2 | 47520 | -- | -- |
| 1667.8 | 1.91 | 6.46 | -0.536 | -- | -- | -- | -- | 0.215 | -- | -- | -- | -- | -- |
| 648.34 | 1.19 | 6.38 | -- | 4.45 | -- | -- | -- | 0.184 | 5.71 | -- | -- | -- | -- |
| 1404.95 | 1.75 | 6.38 | -- | -- | -3.24 | -- | -- | 0.563 | -- | 24.2 | 4339 | -- | -- |
| 1675.36 | 1.91 | 6.45 | -- | -- | -- | -- | -- | 0.274 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 503.54 | wind | 7 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 2 | 505.20 | wind | 1 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 3 | 505.34 | wind | 3 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 5 | 506.22 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 13 | 509.88 | temperature | 25 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 17 | 510.54 | temperature | 25 | 43200 | > th | dose independent | rect. | 6 | 5 |
| 19 | 510.73 | temperature | 25 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 22 | 510.98 | temperature | 25 | 43200 | < th | dose independent | rect. | 6 | 5 |
| 23 | 511.06 | wind | 1 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 26 | 511.20 | temperature | 20 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 31 | 511.52 | temperature | 25 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 39 | 511.69 | temperature | 25 | 43200 | > th | dose independent | rect. | 1 | 12 |
| 44 | 511.84 | temperature | 25 | 43200 | < th | dose independent | rect. | 3 | 9 |
| 56 | 512.01 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 59 | 512.04 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 64 | 512.09 | temperature | 25 | 43200 | < th | dose independent | rect. | 1 | 12 |
| 79 | 512.40 | temperature | 25 | 43200 | > th | dose independent | rect. | 21 | 17 |
| 86 | 512.49 | temperature | 25 | 43200 | > th | dose independent | sin | 6 | NA |
| 94 | 512.58 | temperature | 25 | 43200 | < th | dose independent | rect. | 20 | 18 |
| 111 | 512.73 | temperature | 25 | 43200 | < th | dose independent | sin | 6 | NA |
| 112 | 512.73 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 120 | 512.78 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 4 |
| 158 | 513.17 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 231 | 513.85 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 4 |
| 308 | 514.42 | temperature | 25 | 43200 | > th | dose independent | rect. | 12 | 23 |
| 351 | 514.66 | temperature | 25 | 43200 | > th | dose independent | rect. | 24 | 23 |
| 357 | 514.71 | temperature | 25 | 43200 | > th | dose independent | no | NA | NA |
| 362 | 514.73 | temperature | 25 | 43200 | > th | dose dependent | sin | 3 | NA |
| 371 | 514.79 | temperature | 25 | 43200 | > th | dose independent | rect. | 5 | 23 |
| 396 | 514.90 | temperature | 25 | 43200 | < th | dose independent | rect. | 24 | 23 |
| 399 | 514.91 | temperature | 25 | 43200 | < th | dose independent | no | NA | NA |
| 402 | 514.91 | temperature | 25 | 43200 | > th | dose independent | rect. | 8 | 23 |
| 416 | 514.96 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 430 | 515.02 | temperature | 25 | 43200 | < th | dose independent | rect. | 3 | 23 |
| 431 | 515.03 | temperature | 25 | 43200 | < th | dose independent | rect. | 5 | 23 |
| 436 | 515.07 | temperature | 25 | 43200 | < th | dose independent | rect. | 8 | 23 |
| 494 | 515.33 | temperature | 20 | 43200 | > th | dose dependent | sin | 9 | NA |
| 553 | 515.61 | wind | 5 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 602 | 515.83 | temperature | 20 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 684 | 516.19 | temperature | 25 | 43200 | < th | dose independent | sin | 15 | NA |
| 724 | 516.36 | temperature | 25 | 43200 | > th | dose independent | sin | 15 | NA |
| 751 | 516.48 | wind | 5 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 807 | 516.68 | wind | 3 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 864 | 516.92 | humidity | 90 | 43200 | > th | dose dependent | rect. | 2 | 21 |
| 993 | 517.48 | temperature | 25 | 43200 | < th | dose independent | rect. | 15 | 8 |