Os07g0254900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os07g0254900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.96 | 0.379 | 7.65 | 2.19 | 0.478 | -1.09 | -0.144 | 4.54 | 0.503 | 5.14 | 24.71 | 1501 | -- | -- |
| 73.61 | 0.4 | 7.78 | 1.04 | 0.553 | -0.677 | 0.00907 | -- | 0.295 | 4.74 | 24.54 | 7108 | -- | -- |
| 65.01 | 0.376 | 7.65 | 2.19 | 0.473 | -1.1 | -- | 4.58 | 0.502 | 5.13 | 24.75 | 1509 | -- | -- |
| 72.85 | 0.398 | 7.78 | 0.973 | 0.495 | -0.696 | -- | -- | 0.302 | 5.2 | 22.86 | 7420 | -- | -- |
| 72.25 | 0.396 | 7.64 | 2.31 | -- | -1.43 | -- | 6.05 | 0.497 | -- | 25.54 | 1805 | -- | -- |
| 91.12 | 0.447 | 7.83 | 0.65 | 0.483 | -- | -0.196 | -- | 0.0716 | 5.38 | -- | -- | -- | -- |
| 91.21 | 0.447 | 7.83 | 0.65 | 0.481 | -- | -- | -- | 0.0725 | 5.37 | -- | -- | -- | -- |
| 84.35 | 0.428 | 7.8 | 0.88 | -- | -0.712 | -- | -- | 0.228 | -- | 25.27 | 7685 | -- | -- |
| 91.99 | 0.447 | 7.84 | -- | 0.477 | -0.498 | -- | -- | 0.0822 | 4.76 | 27.72 | 7595 | -- | -- |
| 103.29 | 0.475 | 7.84 | 0.666 | -- | -- | -- | -- | 0.0844 | -- | -- | -- | -- | -- |
| 102.35 | 0.473 | 7.85 | -- | 0.492 | -- | -- | -- | 0.000119 | 5.32 | -- | -- | -- | -- |
| 103.38 | 0.474 | 7.86 | -- | -- | -0.509 | -- | -- | 0.0187 | -- | 28.1 | 6280 | -- | -- |
| 115 | 0.501 | 7.86 | -- | -- | -- | -- | -- | 0.0105 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.13 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 73 | 62.63 | temperature | 25 | 1440 | > th | dose dependent | sin | 18 | NA |
| 310 | 64.94 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 324 | 65.00 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 372 | 65.37 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 8 |
| 378 | 65.40 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 17 |
| 526 | 66.06 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 574 | 66.22 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 601 | 66.29 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 682 | 66.51 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 22 |
| 728 | 66.70 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 763 | 66.86 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 822 | 67.05 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 829 | 67.08 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 837 | 67.11 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 838 | 67.11 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 867 | 67.21 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 881 | 67.25 | humidity | 90 | 14400 | > th | dose dependent | sin | 12 | NA |
| 911 | 67.35 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 10 |
| 934 | 67.42 | humidity | 80 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 954 | 67.49 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 971 | 67.54 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |