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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0253100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.15 (0.0255) R2 : 0.208
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.13 (0.195) R2dE : 0.216 R2E : 0.203
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0836 (0.0544) R2dN8 : 0.0055 R2N8 : -0.00753
σ : 0.476
deviance : 104.62
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_____
C
peak time of C : --
E
wheather : wind
threshold : 0.843
memory length : 26
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 0.351
open length of G : 2.83

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
101.87 0.474 3.15 -0.168 0.125 2.41 -0.172 -4.48 -0.0723 7.99 0.996 25 23.4 3.95
105.47 0.478 3.13 -0.174 0.11 2.11 0.00157 -- -0.0588 8.27 1.021 33 23.7 3.8
101.95 0.47 3.15 -0.173 0.126 2.41 -- -4.43 -0.072 7.81 0.9692 24 23.3 3.94
105.34 0.478 3.13 -0.115 0.123 2.05 -- -- -0.0501 8.14 1.018 33 23.7 3.82
102.8 0.472 3.15 -0.171 -- 2.41 -- -4.51 -0.0706 -- 0.9638 24 23.4 3.89
129.19 0.533 3.12 -0.0783 0.225 -- -0.214 -- 0.0175 4.61 -- -- -- --
129.3 0.533 3.12 -0.0772 0.223 -- -- -- 0.0186 4.43 -- -- -- --
104.48 0.476 3.15 -0.074 -- 2.14 -- -- -0.088 -- 0.8334 26 0.2 2.8
105.69 0.479 3.13 -- 0.122 2.04 -- -- -0.0396 8.15 1.065 33 23.7 3.81
131.97 0.537 3.12 -0.0685 -- -- -- -- 0.0245 -- -- -- -- --
129.46 0.532 3.12 -- 0.222 -- -- -- 0.0272 4.43 -- -- -- --
104.62 0.476 3.15 -- -- 2.13 -- -- -0.0836 -- 0.843 26 0.351 2.83
132.09 0.536 3.12 -- -- -- -- -- 0.0321 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 103.86 wind 1.0 30 < th dose independent rect. 23 4
3 103.97 wind 1.0 10 < th dose dependent rect. 2 1
10 105.13 wind 1.0 30 < th dose independent rect. 1 2
13 105.86 wind 1.0 30 < th dose independent rect. 14 13
29 107.10 wind 1.0 30 < th dose independent rect. 11 16
50 108.56 humidity 90.0 10 > th dose independent rect. 2 1
54 108.67 atmosphere 1005.0 10 > th dose independent rect. 2 1
55 108.67 temperature 20.0 10 > th dose dependent rect. 2 1
56 108.69 wind 1.0 30 < th dose dependent rect. 14 13
61 108.75 temperature 20.0 10 > th dose independent rect. 2 1
66 108.79 temperature 15.0 30 > th dose independent rect. 3 23
67 108.81 humidity 80.0 30 > th dose dependent rect. 2 1
71 108.83 temperature 25.0 10 < th dose independent rect. 2 1
88 108.85 atmosphere 1015.0 30 < th dose dependent rect. 2 1
91 108.87 temperature 10.0 30 > th dose independent rect. 2 1
94 108.87 humidity 50.0 30 > th dose independent rect. 2 1
97 108.87 atmosphere 995.0 30 > th dose independent rect. 2 1
98 108.87 atmosphere 1010.0 30 < th dose independent rect. 2 1
100 108.87 radiation 1.0 30 < th dose independent rect. 2 1
105 108.87 precipitation 0.1 30 < th dose independent rect. 2 1
107 108.87 radiation 1.0 30 < th dose dependent rect. 2 1
112 108.87 precipitation 0.1 30 < th dose dependent rect. 2 1
114 108.89 atmosphere 1000.0 10 > th dose dependent rect. 2 1
144 108.97 temperature 30.0 30 < th dose dependent rect. 2 1
148 109.22 atmosphere 1000.0 30 > th dose independent rect. 3 23
151 109.50 wind 1.0 30 > th dose independent rect. 2 1
155 109.90 wind 9.0 30 < th dose independent rect. 3 23
156 109.97 wind 1.0 30 < th dose dependent rect. 11 16
161 110.40 precipitation 0.1 30 < th dose independent rect. 3 23
162 110.40 precipitation 0.1 30 < th dose dependent rect. 3 23
177 111.20 temperature 25.0 90 > th dose dependent rect. 1 3
183 111.35 radiation 1.0 4320 < th dose dependent rect. 3 1
206 112.19 wind 9.0 1440 < th dose independent rect. 3 1
207 112.19 temperature 10.0 1440 > th dose independent rect. 3 1
210 112.19 temperature 30.0 1440 < th dose independent rect. 3 1
214 112.19 humidity 50.0 1440 > th dose independent rect. 3 1
223 112.19 atmosphere 995.0 1440 > th dose independent rect. 3 1
224 112.19 radiation 1.0 1440 < th dose independent rect. 3 1
244 112.19 temperature 10.0 1440 > th dose independent rect. 4 23
275 113.86 wind 1.0 10 > th dose independent sin 16 NA
290 114.24 humidity 50.0 30 > th dose independent rect. 3 23
330 115.47 wind 1.0 10 < th dose independent sin 17 NA
383 117.16 wind 1.0 30 > th dose independent rect. 3 23
437 117.79 radiation 1.0 4320 < th dose dependent rect. 1 1
444 117.92 humidity 90.0 10 > th dose independent rect. 24 3
471 118.02 atmosphere 1015.0 30 < th dose independent rect. 3 23
530 119.03 wind 7.0 4320 > th dose independent rect. 6 1
547 119.04 wind 7.0 4320 > th dose dependent rect. 6 1
557 119.13 radiation 1.0 4320 < th dose dependent rect. 19 8
558 119.14 temperature 25.0 270 > th dose dependent rect. 24 6
574 119.42 humidity 90.0 90 < th dose independent rect. 2 1
588 119.55 wind 9.0 720 > th dose dependent rect. 17 1
596 119.65 temperature 10.0 30 > th dose dependent rect. 3 23
598 119.68 atmosphere 1000.0 30 < th dose independent rect. 23 5
614 119.75 temperature 25.0 1440 < th dose independent rect. 1 1
615 119.75 wind 7.0 1440 > th dose dependent rect. 14 1
616 119.76 wind 7.0 4320 < th dose independent rect. 6 1
619 119.80 wind 9.0 720 > th dose dependent rect. 17 9
628 119.81 wind 9.0 720 > th dose dependent rect. 17 6
650 119.87 atmosphere 1000.0 30 < th dose independent rect. 17 11
658 119.89 atmosphere 1000.0 270 < th dose independent rect. 23 1
665 119.92 atmosphere 1000.0 270 < th dose independent rect. 18 2
666 119.92 atmosphere 1000.0 270 < th dose independent rect. 20 5
669 119.93 atmosphere 1000.0 270 < th dose dependent rect. 20 1
671 119.93 atmosphere 1000.0 270 < th dose dependent rect. 18 2
677 119.94 wind 1.0 270 < th dose independent rect. 19 1
683 119.94 wind 1.0 270 < th dose dependent rect. 19 1
714 119.98 atmosphere 1000.0 90 < th dose dependent rect. 22 1
829 120.13 atmosphere 1000.0 10 < th dose independent rect. 23 1
860 120.17 atmosphere 1000.0 10 < th dose independent rect. 17 8
865 120.18 wind 9.0 720 > th dose independent rect. 17 1
910 120.23 wind 9.0 720 > th dose dependent rect. 14 4
929 120.25 wind 9.0 720 > th dose dependent sin 12 NA
953 120.31 atmosphere 1000.0 10 < th dose independent sin 10 NA
980 120.37 wind 1.0 30 > th dose independent rect. 14 12