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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0252300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.01 (0.035) R2 : 0.377
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.12 (0.084) R2dC : 0.246 R2C : 0.264
β3 : 0.916 (0.125) R2dE : 0.0752 R2E : 0.0999
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.286 (0.074) R2dN8 : 0.0269 R2N8 : 0.0302
σ : 0.654
deviance : 197.19
__
_____
C
peak time of C : 22.8
E
wheather : temperature
threshold : 30.16
memory length : 357
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
196.49 0.659 4 0.0338 1.11 0.743 -0.268 1.8 -0.288 22.8 30.18 365 -- --
196.69 0.653 4.01 -0.0871 1.11 0.943 -0.24 -- -0.281 22.8 30.27 363 -- --
196.76 0.653 4 0.0527 1.12 0.72 -- 1.94 -0.286 22.8 30.3 368 -- --
196.92 0.654 4.02 -0.103 1.12 0.933 -- -- -0.296 22.8 30.14 357 -- --
266.86 0.761 3.96 0.0338 -- 1.07 -- 1.95 -0.245 -- 30.38 584 -- --
215.78 0.689 4.04 0.0279 1.23 -- 0.0542 -- -0.353 21.9 -- -- -- --
215.79 0.688 4.04 0.0257 1.23 -- -- -- -0.354 21.9 -- -- -- --
267.42 0.762 3.98 -0.102 -- 1.3 -- -- -0.241 -- 30.4 590 -- --
197.19 0.654 4.01 -- 1.12 0.916 -- -- -0.286 22.8 30.16 357 -- --
306.33 0.818 4 0.039 -- -- -- -- -0.354 -- -- -- -- --
215.8 0.687 4.04 -- 1.23 -- -- -- -0.356 21.9 -- -- -- --
267.74 0.762 3.98 -- -- 1.27 -- -- -0.232 -- 30.31 583 -- --
306.37 0.817 4 -- -- -- -- -- -0.358 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 184.94 wind 1.0 90 > th dose independent rect. 4 16
2 185.47 radiation 10.0 1440 < th dose independent rect. 21 8
3 185.47 temperature 30.0 270 < th dose independent rect. 8 16
5 185.79 humidity 60.0 14400 > th dose independent rect. 21 8
14 187.07 radiation 20.0 1440 < th dose dependent rect. 21 8
17 187.21 temperature 30.0 270 < th dose independent rect. 20 17
27 188.48 temperature 30.0 270 < th dose independent rect. 7 8
33 188.85 temperature 30.0 270 < th dose independent rect. 18 21
36 189.02 temperature 10.0 270 > th dose dependent rect. 3 16
47 189.68 temperature 25.0 90 < th dose independent rect. 15 14
49 189.76 precipitation 0.1 270 < th dose independent rect. 20 17
50 189.76 precipitation 0.1 270 < th dose dependent rect. 20 17
59 190.05 temperature 25.0 90 < th dose independent rect. 13 16
62 190.26 radiation 20.0 14400 < th dose independent rect. 21 9
77 190.76 temperature 10.0 270 > th dose dependent rect. 23 9
81 190.91 temperature 10.0 270 > th dose dependent rect. 13 7
82 190.93 wind 9.0 270 < th dose independent rect. 13 7
92 191.21 temperature 20.0 270 > th dose independent rect. 13 7
94 191.31 temperature 10.0 270 > th dose independent rect. 13 7
96 191.31 atmosphere 1015.0 270 < th dose independent rect. 13 7
97 191.31 temperature 10.0 270 > th dose independent rect. 20 17
98 191.31 atmosphere 995.0 270 > th dose independent rect. 20 17
100 191.34 humidity 80.0 270 > th dose independent rect. 24 8
105 191.38 wind 1.0 270 > th dose independent rect. 13 7
108 191.41 atmosphere 995.0 270 > th dose independent rect. 8 15
109 191.42 atmosphere 1015.0 270 < th dose dependent rect. 13 7
111 191.52 radiation 1.0 270 > th dose independent sin 2 NA
113 191.58 temperature 20.0 90 > th dose independent rect. 1 8
119 191.61 wind 9.0 270 < th dose independent rect. 20 17
124 191.71 radiation 1.0 270 > th dose independent rect. 4 10
151 191.98 radiation 1.0 270 > th dose independent rect. 7 7
153 191.99 humidity 70.0 270 > th dose independent rect. 18 9
169 192.02 temperature 10.0 270 > th dose dependent rect. 23 21
180 192.12 precipitation 0.1 270 < th dose independent rect. 18 21
181 192.12 precipitation 0.1 270 < th dose dependent rect. 18 21
185 192.17 precipitation 0.1 10 < th dose independent rect. 20 18
186 192.17 precipitation 0.1 10 < th dose dependent rect. 20 18
201 192.33 temperature 30.0 720 > th dose independent rect. 8 6
217 192.38 temperature 25.0 270 > th dose dependent sin 13 NA
224 192.50 temperature 10.0 1440 > th dose independent rect. 21 8
227 192.50 temperature 30.0 1440 < th dose independent rect. 21 8
231 192.50 humidity 50.0 1440 > th dose independent rect. 21 8
237 192.50 atmosphere 995.0 1440 > th dose independent rect. 21 8
250 192.50 temperature 10.0 1440 > th dose independent rect. 5 16
253 192.51 humidity 50.0 270 > th dose independent rect. 8 16
258 192.55 temperature 25.0 90 < th dose independent sin 14 NA
262 192.58 precipitation 0.1 270 < th dose independent rect. 13 7
264 192.58 precipitation 0.1 270 < th dose dependent rect. 13 7
273 192.68 temperature 25.0 10 < th dose independent sin 14 NA
283 192.77 atmosphere 1015.0 90 < th dose dependent rect. 15 6
300 192.92 wind 9.0 270 < th dose independent rect. 14 17
310 193.01 precipitation 0.1 270 < th dose independent rect. 7 7
311 193.01 temperature 30.0 270 < th dose independent rect. 18 9
313 193.01 precipitation 0.1 270 < th dose dependent rect. 7 7
315 193.01 temperature 20.0 10 > th dose dependent rect. 16 10
317 193.02 temperature 30.0 720 > th dose independent rect. 11 3
322 193.02 radiation 30.0 270 < th dose independent rect. 23 9
328 193.05 atmosphere 1015.0 270 < th dose independent rect. 23 9
329 193.05 radiation 1.0 270 < th dose independent rect. 1 17
333 193.07 temperature 20.0 270 > th dose independent rect. 23 9
342 193.13 wind 1.0 90 > th dose independent rect. 1 8
347 193.16 temperature 10.0 270 > th dose independent rect. 7 7
348 193.16 atmosphere 995.0 270 > th dose independent rect. 7 7
349 193.16 atmosphere 1015.0 270 < th dose independent rect. 7 7
350 193.16 temperature 10.0 270 > th dose independent rect. 14 17
352 193.16 temperature 10.0 270 > th dose dependent rect. 11 22
353 193.17 temperature 25.0 90 > th dose independent sin 14 NA
362 193.21 precipitation 0.1 270 < th dose independent rect. 8 15
365 193.21 precipitation 0.1 270 < th dose dependent rect. 8 15
396 193.37 temperature 25.0 90 > th dose independent rect. 16 9
399 193.38 radiation 1.0 270 < th dose independent rect. 23 21
400 193.39 temperature 10.0 270 > th dose independent rect. 23 9
401 193.39 temperature 30.0 270 < th dose independent rect. 23 9
402 193.39 humidity 50.0 270 > th dose independent rect. 23 9
404 193.39 atmosphere 995.0 270 > th dose independent rect. 23 9
405 193.39 temperature 10.0 270 > th dose independent rect. 8 15
412 193.43 wind 9.0 270 < th dose independent rect. 23 9
421 193.46 humidity 50.0 270 > th dose independent rect. 20 16
431 193.53 wind 7.0 30 < th dose independent rect. 14 6
436 193.54 temperature 25.0 270 > th dose dependent rect. 16 9
447 193.59 humidity 50.0 270 > th dose dependent rect. 23 9
467 193.69 atmosphere 1015.0 10 < th dose dependent rect. 14 8
469 193.70 humidity 90.0 30 < th dose independent rect. 20 8
476 193.73 wind 9.0 270 < th dose independent rect. 7 7
481 193.75 wind 1.0 270 > th dose independent rect. 19 8
483 193.75 temperature 20.0 270 > th dose independent rect. 13 19
485 193.76 temperature 25.0 10 > th dose independent rect. 16 9
491 193.79 temperature 25.0 10 < th dose independent rect. 14 15
499 193.81 radiation 1.0 270 < th dose independent rect. 18 9
507 193.86 temperature 20.0 30 > th dose independent rect. 14 6
509 193.86 humidity 60.0 90 > th dose independent rect. 1 8
513 193.86 temperature 25.0 270 > th dose dependent rect. 15 17
518 193.89 radiation 40.0 30 < th dose dependent rect. 13 7
531 193.94 temperature 10.0 90 > th dose independent rect. 1 8
539 193.94 atmosphere 995.0 90 > th dose independent rect. 1 8
545 193.95 wind 9.0 90 < th dose independent rect. 1 8
551 193.96 radiation 1.0 90 > th dose independent rect. 9 7
553 193.96 atmosphere 995.0 270 > th dose independent rect. 17 22
563 194.01 wind 1.0 10 > th dose independent rect. 14 6
565 194.01 precipitation 0.1 270 < th dose independent rect. 18 9
571 194.01 precipitation 0.1 270 < th dose dependent rect. 18 9
581 194.04 radiation 40.0 10 < th dose dependent rect. 14 19
592 194.10 temperature 10.0 10 > th dose dependent rect. 14 8
600 194.14 atmosphere 995.0 270 > th dose independent rect. 18 9
608 194.16 temperature 10.0 1440 > th dose independent rect. 15 6
615 194.16 temperature 10.0 1440 > th dose independent rect. 21 18
627 194.17 wind 9.0 270 < th dose independent rect. 3 15
633 194.18 temperature 10.0 30 > th dose independent rect. 14 6
635 194.18 atmosphere 1010.0 30 < th dose independent rect. 14 6
638 194.18 temperature 10.0 30 > th dose independent rect. 20 18
640 194.19 radiation 40.0 30 < th dose independent rect. 14 6
649 194.20 radiation 40.0 270 < th dose independent rect. 15 15
662 194.24 atmosphere 1015.0 270 < th dose independent rect. 14 17
666 194.25 radiation 40.0 270 < th dose dependent rect. 23 9
673 194.26 radiation 1.0 270 < th dose dependent rect. 18 9
694 194.29 wind 1.0 270 > th dose independent rect. 8 16
705 194.30 temperature 30.0 270 < th dose dependent rect. 7 19
719 194.32 wind 9.0 30 < th dose independent rect. 20 18
727 194.35 wind 1.0 270 > th dose independent rect. 4 1
739 194.38 temperature 20.0 270 > th dose independent rect. 14 17
743 194.38 radiation 40.0 90 < th dose dependent rect. 15 18
798 194.52 radiation 1.0 10 > th dose independent rect. 9 7
799 194.52 precipitation 0.1 10 < th dose independent rect. 22 16
802 194.52 precipitation 0.1 10 < th dose dependent rect. 22 16
805 194.53 temperature 10.0 270 > th dose dependent rect. 15 3
812 194.54 temperature 15.0 270 > th dose independent rect. 3 15
843 194.61 temperature 30.0 720 < th dose independent sin 8 NA
846 194.62 radiation 1.0 270 < th dose dependent rect. 1 17
858 194.66 humidity 90.0 270 < th dose independent rect. 20 3
951 194.76 wind 9.0 270 < th dose independent rect. 18 9
960 194.77 atmosphere 1015.0 10 < th dose dependent rect. 16 4
967 194.79 wind 3.0 90 > th dose dependent rect. 4 1
976 194.80 wind 9.0 10 < th dose dependent rect. 20 18
978 194.81 temperature 10.0 270 > th dose independent rect. 18 9
984 194.81 atmosphere 1015.0 270 < th dose independent rect. 3 15