Os07g0252200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os07g0252200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.48 | 0.365 | 7.58 | 0.617 | 1.08 | -0.825 | -0.835 | 1.22 | -0.274 | 22.6 | 25.3 | 2160 | -- | -- |
| 62.37 | 0.368 | 7.62 | 0.307 | 1.15 | -0.784 | -0.596 | -- | -0.362 | 22.7 | 25.3 | 2220 | -- | -- |
| 62.1 | 0.367 | 7.57 | 0.691 | 1.06 | -0.821 | -- | 1.4 | -0.29 | 22.6 | 26.2 | 2242 | -- | -- |
| 63.76 | 0.372 | 7.63 | 0.281 | 1 | -0.718 | -- | -- | -0.411 | 22.6 | 26.1 | 2279 | -- | -- |
| 100.42 | 0.469 | 7.57 | 0.439 | -- | -0.638 | -- | 0.441 | -0.299 | -- | 23.7 | 8765 | -- | -- |
| 78.32 | 0.415 | 7.67 | -0.0218 | 0.91 | -- | -0.742 | -- | -0.616 | 22.8 | -- | -- | -- | -- |
| 80.62 | 0.42 | 7.67 | 0.00863 | 0.914 | -- | -- | -- | -0.614 | 22.7 | -- | -- | -- | -- |
| 99.45 | 0.467 | 7.59 | 0.291 | -- | -0.654 | -- | -- | -0.349 | -- | 23.3 | 7383 | -- | -- |
| 65.34 | 0.376 | 7.63 | -- | 1.04 | -0.661 | -- | -- | -0.44 | 22.7 | 26.1 | 2247 | -- | -- |
| 132.24 | 0.537 | 7.65 | 0.0268 | -- | -- | -- | -- | -0.609 | -- | -- | -- | -- | -- |
| 80.62 | 0.42 | 7.67 | -- | 0.914 | -- | -- | -- | -0.615 | 22.7 | -- | -- | -- | -- |
| 101.57 | 0.471 | 7.6 | -- | -- | -0.616 | -- | -- | -0.395 | -- | 23.3 | 7383 | -- | -- |
| 132.26 | 0.537 | 7.65 | -- | -- | -- | -- | -- | -0.612 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.97 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 2 | 59.13 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 3 | 59.95 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 16 |
| 5 | 60.02 | temperature | 25 | 720 | > th | dose independent | rect. | 9 | 15 |
| 9 | 60.24 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 10 |
| 11 | 60.27 | wind | 5 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 15 | 60.34 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 10 |
| 30 | 60.45 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 32 | 60.46 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 36 | 60.48 | wind | 5 | 43200 | > th | dose dependent | rect. | 17 | 5 |
| 41 | 60.55 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 16 |
| 44 | 60.58 | wind | 7 | 43200 | > th | dose independent | sin | 17 | NA |
| 61 | 60.64 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 12 |
| 64 | 60.65 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 16 |
| 70 | 60.67 | wind | 7 | 43200 | < th | dose independent | sin | 17 | NA |
| 73 | 60.67 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 74 | 60.69 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 83 | 60.71 | wind | 7 | 43200 | > th | dose dependent | rect. | 14 | 9 |
| 84 | 60.72 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 87 | 60.72 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 111 | 60.79 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 141 | 60.91 | wind | 7 | 43200 | > th | dose dependent | rect. | 13 | 15 |
| 174 | 61.01 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 17 |
| 203 | 61.10 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 17 |
| 226 | 61.16 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 17 |
| 235 | 61.18 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 17 |
| 239 | 61.19 | wind | 7 | 43200 | > th | dose dependent | sin | 16 | NA |
| 270 | 61.26 | temperature | 25 | 720 | > th | dose independent | sin | 20 | NA |
| 309 | 61.34 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 312 | 61.35 | temperature | 25 | 720 | < th | dose independent | sin | 20 | NA |
| 351 | 61.43 | wind | 5 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 416 | 61.56 | wind | 7 | 43200 | > th | dose independent | rect. | 3 | 19 |
| 430 | 61.59 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 19 |
| 458 | 61.65 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 503 | 61.75 | radiation | 1 | 1440 | < th | dose dependent | sin | 15 | NA |
| 531 | 61.79 | temperature | 25 | 1440 | < th | dose independent | rect. | 13 | 11 |
| 549 | 61.80 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 568 | 61.82 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 13 |
| 570 | 61.82 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 18 |
| 573 | 61.83 | temperature | 25 | 1440 | > th | dose independent | rect. | 13 | 11 |
| 607 | 61.86 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 616 | 61.86 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 17 |
| 657 | 61.92 | radiation | 1 | 1440 | < th | dose independent | sin | 15 | NA |
| 661 | 61.92 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 671 | 61.94 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 677 | 61.94 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 7 |
| 699 | 61.96 | temperature | 25 | 1440 | > th | dose dependent | rect. | 2 | 12 |
| 707 | 61.97 | temperature | 25 | 1440 | > th | dose dependent | sin | 5 | NA |
| 741 | 62.01 | radiation | 1 | 1440 | > th | dose independent | sin | 15 | NA |
| 745 | 62.01 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 23 |
| 758 | 62.02 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 6 |
| 764 | 62.02 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 765 | 62.03 | wind | 7 | 43200 | > th | dose independent | no | NA | NA |
| 777 | 62.04 | wind | 7 | 43200 | < th | dose independent | no | NA | NA |
| 780 | 62.04 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 23 |
| 794 | 62.06 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 811 | 62.07 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 10 |
| 812 | 62.07 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 16 |
| 822 | 62.08 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 5 |
| 829 | 62.09 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 848 | 62.10 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 23 |
| 866 | 62.11 | wind | 7 | 43200 | > th | dose independent | rect. | 19 | 23 |
| 916 | 62.15 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 921 | 62.16 | temperature | 25 | 4320 | < th | dose independent | rect. | 16 | 3 |
| 938 | 62.17 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 950 | 62.19 | temperature | 25 | 4320 | > th | dose independent | rect. | 16 | 3 |
| 984 | 62.22 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 13 |