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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0249100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.37 (0.0421) R2 : 0.385
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.73 (0.106) R2dC : 0.369 R2C : 0.319
β3 : 3.15 (0.469) R2dE : 0.0634 R2E : 0.0159
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0706 (0.0889) R2dN8 : 0.00109 R2N8 : 0.0013
σ : 0.79
deviance : 287.68
__
_____
C
peak time of C : 15.1
E
wheather : wind
threshold : 8.7
memory length : 188
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
282.41 0.79 6.36 0.422 1.74 3.12 -0.475 0.598 0.121 15.1 8.785 189 -- --
282.42 0.783 6.36 0.426 1.74 2.98 -0.486 -- 0.121 15.1 8.792 191 -- --
283.11 0.784 6.35 0.412 1.74 3.28 -- 1.55 0.121 15.1 8.784 191 -- --
283.18 0.784 6.36 0.422 1.74 2.9 -- -- 0.12 15.1 8.791 190 -- --
450.9 0.989 6.36 0.401 -- 2.35 -- 2.54 0.085 -- 8.8 198 -- --
306.23 0.82 6.34 0.618 1.63 -- -0.082 -- 0.193 15 -- -- -- --
306.25 0.82 6.34 0.616 1.63 -- -- -- 0.193 15 -- -- -- --
446.42 0.984 6.36 0.388 -- 1.62 -- -- 0.0885 -- 9 745 -- --
287.68 0.79 6.37 -- 1.73 3.15 -- -- 0.0706 15.1 8.7 188 -- --
459.09 1 6.35 0.547 -- -- -- -- 0.15 -- -- -- -- --
316.26 0.832 6.36 -- 1.62 -- -- -- 0.124 15 -- -- -- --
450.22 0.988 6.37 -- -- 1.76 -- -- 0.0544 -- 9 796 -- --
466.97 1.01 6.36 -- -- -- -- -- 0.0898 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 270.64 temperature 10.0 90 > th dose dependent rect. 7 19
5 272.35 temperature 10.0 10 > th dose dependent rect. 8 18
37 275.92 atmosphere 1005.0 10 > th dose independent rect. 12 20
39 276.05 wind 7.0 270 < th dose independent rect. 5 21
49 276.95 temperature 30.0 90 < th dose dependent rect. 3 16
52 277.23 radiation 10.0 30 < th dose independent rect. 21 23
53 277.29 temperature 30.0 90 < th dose independent rect. 3 16
55 277.32 radiation 20.0 30 < th dose dependent rect. 21 23
56 277.38 temperature 10.0 90 > th dose dependent rect. 7 14
57 277.43 temperature 10.0 10 > th dose dependent rect. 8 14
64 277.78 temperature 30.0 270 < th dose independent rect. 1 16
66 277.92 atmosphere 995.0 10 > th dose dependent rect. 12 20
80 278.54 wind 9.0 270 < th dose dependent rect. 6 8
96 279.25 wind 5.0 270 < th dose independent rect. 6 8
119 279.80 atmosphere 1005.0 10 > th dose independent rect. 17 15
135 280.07 temperature 20.0 10 > th dose dependent rect. 7 5
144 280.31 temperature 15.0 10 > th dose dependent rect. 20 16
145 280.34 temperature 30.0 10 < th dose dependent rect. 4 16
161 280.54 wind 7.0 270 < th dose independent rect. 6 15
173 280.66 wind 7.0 270 < th dose dependent rect. 7 2
180 280.76 temperature 15.0 270 > th dose dependent rect. 7 2
186 280.85 wind 7.0 30 < th dose independent rect. 8 18
188 280.88 atmosphere 1005.0 10 > th dose independent rect. 2 6
204 281.15 atmosphere 1005.0 270 > th dose independent rect. 1 5
205 281.15 wind 7.0 90 < th dose independent rect. 7 10
219 281.32 humidity 70.0 720 > th dose dependent rect. 23 2
234 281.46 wind 3.0 1440 < th dose dependent rect. 6 3
239 281.50 atmosphere 995.0 90 > th dose dependent rect. 2 17
250 281.64 wind 5.0 270 < th dose independent rect. 7 2
260 281.75 atmosphere 995.0 10 > th dose dependent rect. 12 8
266 281.80 temperature 20.0 10 > th dose independent rect. 20 16
270 281.81 temperature 10.0 90 > th dose dependent rect. 7 10
282 281.95 wind 3.0 1440 < th dose independent rect. 7 2
290 282.02 radiation 40.0 270 < th dose independent rect. 11 19
295 282.05 radiation 10.0 270 < th dose dependent sin 7 NA
299 282.09 atmosphere 995.0 10 > th dose dependent rect. 2 18
300 282.11 atmosphere 1005.0 270 > th dose independent rect. 23 8
330 282.37 wind 9.0 270 < th dose dependent rect. 5 21
332 282.38 wind 3.0 1440 > th dose independent rect. 7 2
348 282.49 wind 9.0 270 < th dose dependent rect. 6 19
349 282.50 atmosphere 1000.0 10 > th dose dependent rect. 2 6
364 282.64 wind 1.0 14400 < th dose independent rect. 24 4
365 282.64 temperature 20.0 270 > th dose independent rect. 6 19
369 282.65 humidity 70.0 720 > th dose dependent rect. 20 6
376 282.74 wind 7.0 270 < th dose independent rect. 16 10
383 282.78 wind 1.0 14400 > th dose independent rect. 24 4
392 282.87 atmosphere 1005.0 30 > th dose independent rect. 21 11
404 282.99 radiation 10.0 90 < th dose independent sin 4 NA
405 283.00 radiation 10.0 90 < th dose independent rect. 4 15
409 283.04 atmosphere 995.0 30 > th dose dependent rect. 17 15
411 283.05 radiation 10.0 43200 < th dose dependent rect. 21 6
421 283.12 radiation 10.0 90 < th dose independent rect. 12 20
433 283.16 radiation 10.0 270 < th dose dependent rect. 1 10
435 283.17 temperature 30.0 90 < th dose dependent rect. 3 12
454 283.31 radiation 10.0 90 > th dose independent sin 4 NA
459 283.32 temperature 30.0 270 < th dose independent rect. 11 19
464 283.36 atmosphere 1000.0 10 > th dose independent rect. 12 8
466 283.37 atmosphere 1005.0 270 > th dose independent rect. 14 16
496 283.60 radiation 20.0 10 < th dose independent rect. 2 6
500 283.63 atmosphere 1000.0 270 > th dose dependent rect. 1 5
505 283.65 atmosphere 1005.0 90 > th dose independent rect. 1 18
515 283.68 humidity 70.0 90 > th dose independent rect. 2 17
519 283.70 wind 7.0 10 < th dose independent rect. 8 4
540 283.76 humidity 50.0 90 > th dose dependent rect. 3 16
564 283.86 temperature 30.0 270 < th dose independent rect. 10 21
580 283.96 atmosphere 1005.0 10 > th dose independent rect. 2 17
594 284.02 radiation 10.0 270 > th dose independent sin 10 NA
602 284.06 wind 5.0 270 < th dose independent rect. 2 3
624 284.18 radiation 10.0 270 > th dose independent rect. 16 19
631 284.22 wind 7.0 30 < th dose independent rect. 20 16
634 284.23 wind 9.0 10 < th dose dependent rect. 8 4
640 284.25 radiation 10.0 270 < th dose dependent rect. 1 16
644 284.26 wind 1.0 1440 > th dose dependent rect. 6 3
649 284.28 humidity 60.0 10 > th dose independent rect. 12 20
661 284.34 temperature 15.0 90 > th dose independent rect. 17 14
666 284.36 wind 9.0 10 > th dose dependent rect. 17 21
688 284.47 radiation 10.0 10 < th dose independent sin 4 NA
706 284.52 radiation 40.0 90 < th dose dependent rect. 12 19
711 284.54 wind 5.0 270 < th dose independent rect. 1 5
720 284.56 atmosphere 1000.0 270 > th dose dependent rect. 2 3
727 284.58 humidity 60.0 90 > th dose independent rect. 12 19
741 284.63 atmosphere 1015.0 90 < th dose dependent rect. 7 20
761 284.70 radiation 10.0 270 > th dose independent rect. 17 17
766 284.71 temperature 10.0 90 > th dose dependent rect. 19 8
768 284.72 radiation 10.0 90 < th dose independent rect. 3 11
772 284.72 radiation 20.0 90 < th dose dependent rect. 4 15
780 284.75 temperature 30.0 90 < th dose independent rect. 11 8
782 284.77 humidity 90.0 90 < th dose independent rect. 7 10
783 284.77 radiation 40.0 270 < th dose independent rect. 1 15
789 284.80 temperature 15.0 90 > th dose independent rect. 7 10
819 284.88 temperature 15.0 10 > th dose dependent rect. 7 7
829 284.91 radiation 40.0 270 < th dose dependent rect. 1 15
838 284.94 wind 1.0 14400 < th dose dependent rect. 6 1
848 284.97 temperature 20.0 10 > th dose independent rect. 8 4
856 284.99 humidity 80.0 10 < th dose independent rect. 8 4
860 285.00 precipitation 0.1 270 < th dose independent rect. 2 3
862 285.00 precipitation 0.1 270 < th dose dependent rect. 2 3
867 285.02 radiation 10.0 270 < th dose independent rect. 1 13
876 285.06 wind 9.0 270 > th dose dependent rect. 16 22
896 285.11 radiation 10.0 90 > th dose independent rect. 15 23
897 285.11 humidity 90.0 720 < th dose dependent rect. 21 2
904 285.14 radiation 10.0 270 > th dose independent rect. 6 4
922 285.15 temperature 30.0 90 < th dose independent rect. 17 14
923 285.15 temperature 30.0 30 < th dose dependent sin 3 NA
961 285.24 radiation 10.0 10 < th dose independent rect. 2 13
977 285.28 wind 9.0 270 < th dose independent sin 22 NA
981 285.29 radiation 1.0 270 > th dose independent rect. 7 2