Os07g0246200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Calreticulin (Fragment).
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Os07g0246200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Calreticulin (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 80.95 | 0.423 | 14 | 0.0192 | 0.764 | -0.19 | 0.149 | 1.65 | 0.103 | 19.2 | 19.8 | 304 | -- | -- |
| 87.24 | 0.435 | 13.9 | 0.24 | 0.695 | -0.35 | -0.121 | -- | 0.16 | 19.5 | 20.4 | 118 | -- | -- |
| 81.01 | 0.419 | 14 | 0.0195 | 0.765 | -0.197 | -- | 1.62 | 0.104 | 19.3 | 19.8 | 304 | -- | -- |
| 86.88 | 0.434 | 13.9 | 0.245 | 0.742 | -0.432 | -- | -- | 0.126 | 19.6 | 20.46 | 118 | -- | -- |
| 110.67 | 0.49 | 14 | -0.109 | -- | -0.353 | -- | 1.61 | 0.0832 | -- | 19.5 | 447 | -- | -- |
| 93.74 | 0.454 | 13.9 | 0.368 | 0.77 | -- | -0.195 | -- | 0.222 | 19.1 | -- | -- | -- | -- |
| 93.84 | 0.454 | 13.9 | 0.371 | 0.769 | -- | -- | -- | 0.221 | 19.1 | -- | -- | -- | -- |
| 111.74 | 0.492 | 13.9 | 0.232 | -- | -0.462 | -- | -- | 0.073 | -- | 26.27 | 395 | -- | -- |
| 88.43 | 0.438 | 13.9 | -- | 0.756 | -0.546 | -- | -- | 0.104 | 19.6 | 19.6 | 180 | -- | -- |
| 125.06 | 0.523 | 13.9 | 0.357 | -- | -- | -- | -- | 0.208 | -- | -- | -- | -- | -- |
| 97.47 | 0.462 | 13.9 | -- | 0.766 | -- | -- | -- | 0.18 | 19.1 | -- | -- | -- | -- |
| 113.13 | 0.495 | 13.9 | -- | -- | -0.488 | -- | -- | 0.0404 | -- | 26.22 | 398 | -- | -- |
| 128.42 | 0.529 | 13.9 | -- | -- | -- | -- | -- | 0.168 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.20 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 7 |
| 3 | 72.32 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 4 |
| 7 | 73.33 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 6 |
| 14 | 73.71 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 2 |
| 16 | 73.78 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 3 |
| 17 | 73.95 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 43 | 75.77 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 63 | 77.00 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 64 | 77.17 | humidity | 80 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 68 | 77.58 | humidity | 80 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 79 | 78.07 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 18 |
| 80 | 78.18 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 20 |
| 99 | 78.45 | humidity | 90 | 14400 | < th | dose independent | rect. | 4 | 5 |
| 134 | 78.93 | humidity | 90 | 14400 | < th | dose independent | rect. | 4 | 8 |
| 185 | 79.35 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 7 |
| 260 | 79.85 | radiation | 1 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 270 | 79.85 | radiation | 1 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 284 | 79.87 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 22 |
| 310 | 80.01 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 319 | 80.04 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 21 | 9 |
| 355 | 80.25 | wind | 3 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 360 | 80.29 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 17 |
| 388 | 80.40 | humidity | 90 | 14400 | > th | dose independent | sin | 2 | NA |
| 393 | 80.41 | humidity | 90 | 14400 | < th | dose independent | sin | 3 | NA |
| 405 | 80.43 | temperature | 20 | 270 | < th | dose independent | rect. | 18 | 21 |
| 415 | 80.46 | humidity | 50 | 43200 | < th | dose dependent | rect. | 6 | 3 |
| 420 | 80.47 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 9 |
| 424 | 80.49 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 427 | 80.49 | temperature | 20 | 30 | > th | dose independent | rect. | 5 | 23 |
| 428 | 80.49 | humidity | 80 | 14400 | > th | dose dependent | sin | 5 | NA |
| 445 | 80.54 | radiation | 1 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 474 | 80.61 | temperature | 20 | 270 | < th | dose independent | rect. | 19 | 17 |
| 487 | 80.62 | humidity | 90 | 14400 | > th | dose dependent | sin | 0 | NA |
| 582 | 80.83 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 7 |
| 589 | 80.84 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 22 | 10 |
| 593 | 80.84 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 22 | 8 |
| 595 | 80.85 | humidity | 90 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 616 | 80.90 | humidity | 50 | 43200 | < th | dose dependent | rect. | 20 | 13 |
| 660 | 80.97 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 6 |
| 675 | 80.99 | temperature | 20 | 270 | < th | dose independent | rect. | 3 | 23 |
| 691 | 81.03 | temperature | 20 | 270 | < th | dose independent | rect. | 8 | 23 |
| 692 | 81.03 | temperature | 20 | 270 | < th | dose dependent | sin | 9 | NA |
| 697 | 81.04 | humidity | 70 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 714 | 81.07 | temperature | 15 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 727 | 81.09 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 752 | 81.14 | humidity | 90 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 760 | 81.16 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 769 | 81.17 | humidity | 70 | 14400 | < th | dose dependent | rect. | 20 | 11 |
| 782 | 81.21 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 20 | 6 |
| 862 | 81.34 | temperature | 15 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 866 | 81.35 | wind | 9 | 14400 | < th | dose independent | rect. | 22 | 5 |
| 877 | 81.36 | temperature | 20 | 270 | < th | dose dependent | rect. | 10 | 22 |
| 885 | 81.39 | wind | 1 | 43200 | > th | dose independent | rect. | 6 | 5 |
| 899 | 81.41 | wind | 9 | 14400 | > th | dose dependent | rect. | 23 | 11 |
| 914 | 81.43 | temperature | 20 | 270 | < th | dose dependent | rect. | 13 | 21 |
| 917 | 81.44 | radiation | 10 | 4320 | < th | dose independent | rect. | 3 | 3 |
| 925 | 81.45 | humidity | 70 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 930 | 81.45 | temperature | 15 | 14400 | < th | dose dependent | rect. | 21 | 2 |
| 944 | 81.48 | humidity | 50 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 960 | 81.49 | temperature | 20 | 270 | < th | dose dependent | rect. | 21 | 12 |
| 962 | 81.50 | wind | 7 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 970 | 81.50 | temperature | 15 | 14400 | < th | dose dependent | rect. | 19 | 5 |
| 979 | 81.51 | temperature | 20 | 30 | > th | dose independent | rect. | 7 | 21 |