Os07g0244400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os07g0244400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.97 | 0.367 | 9 | 1.83 | 1.49 | 0.881 | -0.991 | 0.773 | 0.164 | 20.6 | 24.87 | 10 | -- | -- |
| 61.23 | 0.367 | 9.01 | 1.74 | 1.5 | 0.951 | -1.03 | -- | 0.141 | 20.6 | 24.89 | 13 | -- | -- |
| 64 | 0.375 | 9 | 1.93 | 1.5 | 0.823 | -- | 1.24 | 0.155 | 20.5 | 23.63 | 4 | -- | -- |
| 64.61 | 0.374 | 9.01 | 1.77 | 1.49 | 0.942 | -- | -- | 0.141 | 20.6 | 24.92 | 13 | -- | -- |
| 150.58 | 0.572 | 9.08 | 1.2 | -- | 1.18 | -- | -2.29 | -0.108 | -- | 23.8 | 532 | -- | -- |
| 75.78 | 0.408 | 8.99 | 1.89 | 1.57 | -- | -0.912 | -- | 0.224 | 19.7 | -- | -- | -- | -- |
| 78.14 | 0.414 | 8.99 | 1.91 | 1.57 | -- | -- | -- | 0.223 | 19.7 | -- | -- | -- | -- |
| 141.17 | 0.553 | 8.99 | 1.59 | -- | 1.56 | -- | -- | 0.0313 | -- | 23.96 | 527 | -- | -- |
| 140.43 | 0.552 | 9.08 | -- | 1.48 | 1.43 | -- | -- | -0.178 | 21.2 | 22.72 | 32 | -- | -- |
| 210.6 | 0.678 | 8.95 | 1.89 | -- | -- | -- | -- | 0.2 | -- | -- | -- | -- | -- |
| 174.74 | 0.618 | 9.04 | -- | 1.55 | -- | -- | -- | 0.0099 | 19.8 | -- | -- | -- | -- |
| 199.76 | 0.658 | 9.07 | -- | -- | 2.25 | -- | -- | -0.313 | -- | 16.89 | 575 | -- | -- |
| 305.21 | 0.815 | 9 | -- | -- | -- | -- | -- | -0.00987 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.48 | temperature | 20 | 270 | > th | dose dependent | sin | 4 | NA |
| 2 | 56.51 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 7 |
| 3 | 56.73 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 14 |
| 46 | 58.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 11 |
| 52 | 58.53 | temperature | 25 | 720 | < th | dose independent | rect. | 24 | 11 |
| 58 | 58.61 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 13 |
| 62 | 58.69 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 101 | 59.27 | temperature | 25 | 270 | > th | dose independent | rect. | 3 | 14 |
| 103 | 59.28 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 5 |
| 161 | 59.75 | temperature | 25 | 10 | > th | dose dependent | rect. | 24 | 20 |
| 177 | 59.83 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 16 |
| 225 | 60.13 | temperature | 25 | 720 | > th | dose independent | rect. | 3 | 7 |
| 227 | 60.14 | temperature | 25 | 720 | > th | dose independent | rect. | 4 | 5 |
| 236 | 60.19 | temperature | 25 | 720 | > th | dose independent | sin | 6 | NA |
| 277 | 60.34 | temperature | 25 | 720 | > th | dose independent | rect. | 23 | 12 |
| 312 | 60.48 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 12 |
| 428 | 60.86 | temperature | 25 | 270 | > th | dose independent | sin | 3 | NA |
| 478 | 60.98 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 22 |
| 481 | 60.99 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 549 | 61.12 | temperature | 30 | 270 | < th | dose dependent | sin | 5 | NA |
| 562 | 61.13 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 617 | 61.21 | temperature | 25 | 720 | < th | dose independent | sin | 7 | NA |
| 677 | 61.37 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 22 |
| 776 | 61.59 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 808 | 61.67 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 835 | 61.72 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 836 | 61.72 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 847 | 61.74 | temperature | 25 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 857 | 61.77 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 4 |
| 969 | 61.95 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 1 |