FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0241500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : UDP-glucuronosyl/UDP-glucosyltransferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.1 (0.0566) R2 : 0.612
β1 : -2.57 (0.206) R2dD : 0.138 R2D : 0.131
β2 : 4.68 (0.204) R2dC : 1.05 R2C : -0.0614
β3 : 3.15 (0.199) R2dE : 0.503 R2E : -0.596
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.514 (0.12) R2dN8 : 0.0198 R2N8 : 0.0395
σ : 1.05
deviance : 509.24
__
_____
C
peak time of C : 23.3
E
wheather : temperature
threshold : 6.575
memory length : 718
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.9
open length of G : 3.12

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
508.61 1.06 6.1 -2.71 4.4 2.96 -0.567 -1.26 0.461 23.1 9.647 722 5.97 3.05
509.6 1.05 6.09 -2.59 4.71 3.19 0.184 -- 0.507 23.3 7.119 716 5.93 3.02
508.84 1.05 6.11 -2.67 4.5 3.05 -- -0.667 0.463 23.2 9.014 721 5.93 3.09
509.24 1.05 6.1 -2.57 4.68 3.15 -- -- 0.514 23.3 6.575 718 5.9 3.12
847.68 1.36 6.02 -2.93 -- 2.75 -- -0.279 0.331 -- 12.45 1217 6.1 3.31
600.34 1.15 6.03 -2.28 2.99 -- -0.24 -- 0.723 20.6 -- -- -- --
600.53 1.15 6.03 -2.27 2.99 -- -- -- 0.723 20.6 -- -- -- --
845.22 1.35 6.01 -2.8 -- 2.81 -- -- 0.401 -- 11.85 1210 6.12 3.54
683.5 1.22 6.1 -- 4.65 3.08 -- -- 0.71 23.1 5.96 715 5.78 3.27
1103.39 1.55 5.95 -2.28 -- -- -- -- 0.696 -- -- -- -- --
736.89 1.27 5.97 -- 3 -- -- -- 0.976 20.5 -- -- -- --
728.74 1.26 5.9 -- -- 2.9 -- -- 0.959 -- -222.4 700 10.8 7.55
1241.01 1.64 5.89 -- -- -- -- -- 0.95 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 509.08 temperature 10.0 720 > th dose dependent rect. 6 3
7 525.88 temperature 10.0 720 > th dose dependent rect. 22 11
12 529.01 radiation 1.0 720 < th dose dependent rect. 2 17
20 531.93 temperature 30.0 720 < th dose dependent rect. 2 4
22 532.15 radiation 1.0 720 < th dose dependent rect. 17 16
26 532.57 wind 5.0 720 < th dose independent rect. 6 3
31 533.06 radiation 1.0 720 > th dose independent rect. 6 3
39 534.13 radiation 1.0 720 > th dose independent rect. 14 17
43 534.40 wind 9.0 720 < th dose dependent rect. 6 3
52 534.92 radiation 1.0 720 > th dose independent rect. 14 19
55 535.15 temperature 20.0 720 > th dose independent rect. 6 3
59 535.83 temperature 10.0 10 > th dose dependent rect. 6 23
60 536.00 temperature 20.0 720 > th dose independent rect. 6 1
63 536.14 radiation 1.0 720 > th dose independent rect. 17 16
73 537.54 precipitation 0.1 720 < th dose independent rect. 21 21
74 537.54 precipitation 0.1 720 < th dose dependent rect. 21 21
82 537.97 radiation 1.0 720 < th dose dependent sin 11 NA
83 538.00 radiation 1.0 720 < th dose dependent rect. 18 3
89 538.48 radiation 1.0 720 < th dose independent rect. 2 17
112 540.04 temperature 10.0 720 > th dose dependent rect. 21 21
118 540.30 radiation 40.0 720 < th dose independent rect. 6 3
121 540.33 radiation 1.0 720 < th dose independent rect. 17 16
125 540.61 radiation 1.0 720 < th dose independent rect. 18 13
129 540.75 temperature 10.0 270 > th dose dependent rect. 5 13
139 541.39 radiation 1.0 720 < th dose independent sin 11 NA
157 542.28 radiation 1.0 720 < th dose independent rect. 2 19
169 542.63 radiation 1.0 720 > th dose independent rect. 4 5
182 542.84 radiation 1.0 720 > th dose independent sin 11 NA
205 544.07 radiation 1.0 720 < th dose independent rect. 18 3
227 544.73 atmosphere 1015.0 720 < th dose independent rect. 18 3
239 545.22 temperature 10.0 720 > th dose dependent rect. 14 19
242 545.29 temperature 30.0 720 < th dose dependent rect. 1 11
249 545.49 radiation 1.0 720 < th dose dependent sin 1 NA
266 546.05 precipitation 0.1 720 < th dose independent rect. 6 3
267 546.05 precipitation 0.1 720 < th dose dependent rect. 6 3
280 546.28 temperature 10.0 720 > th dose dependent rect. 22 4
282 546.41 temperature 25.0 720 > th dose independent rect. 3 6
304 546.77 temperature 30.0 720 < th dose independent rect. 11 1
329 547.28 atmosphere 995.0 720 > th dose independent rect. 18 3
332 547.32 humidity 50.0 720 > th dose independent rect. 6 3
333 547.32 atmosphere 995.0 720 > th dose independent rect. 6 3
334 547.32 atmosphere 1015.0 720 < th dose independent rect. 6 3
335 547.32 temperature 10.0 720 > th dose independent rect. 9 21
336 547.35 temperature 15.0 10 > th dose dependent rect. 6 14
340 547.49 temperature 15.0 720 > th dose dependent sin 7 NA
343 547.53 wind 9.0 720 < th dose independent rect. 18 3
345 547.54 temperature 10.0 270 > th dose dependent rect. 4 22
346 547.55 temperature 10.0 720 > th dose independent rect. 18 3
347 547.55 humidity 50.0 720 > th dose independent rect. 18 3
348 547.55 radiation 20.0 720 < th dose independent rect. 18 3
351 547.55 temperature 10.0 720 > th dose independent rect. 21 21
378 547.96 humidity 90.0 4320 > th dose dependent rect. 21 1
402 548.70 temperature 30.0 4320 < th dose independent rect. 15 1
420 548.92 precipitation 0.1 720 < th dose independent rect. 21 12
422 548.92 precipitation 0.1 720 < th dose dependent rect. 21 12
431 549.10 radiation 1.0 720 < th dose dependent rect. 18 1
440 549.38 temperature 30.0 270 < th dose independent rect. 9 21
461 549.72 temperature 30.0 4320 > th dose independent rect. 14 2
469 549.86 temperature 30.0 720 < th dose independent rect. 2 10
476 550.04 humidity 50.0 720 > th dose independent rect. 16 14
480 550.10 humidity 70.0 90 > th dose independent rect. 18 12
494 550.14 radiation 40.0 270 < th dose independent rect. 21 12
517 550.57 temperature 30.0 270 < th dose independent rect. 9 11
527 550.65 temperature 20.0 4320 > th dose dependent rect. 3 1
530 550.73 temperature 20.0 720 > th dose independent rect. 22 11
544 551.00 temperature 20.0 90 > th dose dependent rect. 15 20
556 551.14 precipitation 0.1 720 < th dose independent rect. 14 19
557 551.14 temperature 30.0 720 < th dose dependent sin 7 NA
560 551.14 precipitation 0.1 720 < th dose dependent rect. 14 19
562 551.18 radiation 1.0 720 < th dose independent rect. 1 8
572 551.26 wind 9.0 720 < th dose independent rect. 21 21
595 551.46 temperature 30.0 270 < th dose independent rect. 17 12
608 551.64 atmosphere 1005.0 90 > th dose dependent rect. 11 11
613 551.75 precipitation 0.1 720 < th dose independent rect. 6 18
614 551.75 precipitation 0.1 720 < th dose dependent rect. 6 18
624 551.88 wind 3.0 14400 > th dose dependent rect. 21 1
646 552.11 temperature 30.0 270 < th dose dependent rect. 24 21
667 552.35 radiation 40.0 720 < th dose independent rect. 23 10
675 552.39 radiation 1.0 720 < th dose independent rect. 1 6
689 552.49 radiation 1.0 720 < th dose dependent rect. 1 8
707 552.71 precipitation 0.1 720 < th dose independent rect. 5 13
708 552.71 precipitation 0.1 720 < th dose dependent rect. 5 13
714 552.77 wind 7.0 720 < th dose independent rect. 21 13
735 552.89 temperature 10.0 720 > th dose dependent rect. 14 3
740 552.96 temperature 30.0 720 < th dose dependent rect. 18 18
742 552.98 temperature 25.0 4320 > th dose dependent rect. 1 7
848 553.85 wind 7.0 720 < th dose dependent rect. 6 1
855 553.93 temperature 10.0 270 > th dose dependent rect. 14 11
862 553.99 wind 7.0 720 < th dose independent rect. 23 10
874 554.11 precipitation 0.1 720 < th dose independent rect. 13 5
875 554.11 precipitation 0.1 720 < th dose dependent rect. 13 5
902 554.32 wind 1.0 720 > th dose independent rect. 18 3
903 554.32 wind 3.0 720 < th dose dependent rect. 6 1
904 554.33 radiation 20.0 720 < th dose independent rect. 16 14
932 554.50 radiation 1.0 43200 < th dose dependent rect. 24 3
945 554.58 temperature 25.0 4320 > th dose independent rect. 2 6
959 554.72 radiation 1.0 720 < th dose independent sin 1 NA
983 554.87 wind 5.0 14400 < th dose independent rect. 19 20
987 554.89 precipitation 0.1 720 < th dose independent rect. 21 5
988 554.89 precipitation 0.1 720 < th dose dependent rect. 21 5
993 554.92 atmosphere 1015.0 720 < th dose independent rect. 9 12
998 554.95 wind 5.0 14400 > th dose independent rect. 19 20