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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0240200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Beta-1,3 glucanase precursor (EC 3.2.1.39).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.28 (0.0418) R2 : 0.34
β1 : -0.0815 (0.152) R2dD : 0.000505 R2D : -0.00298
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.8 (0.164) R2dE : 0.218 R2E : 0.0137
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -9.33 (0.695) R2dD*E : 0.323 R2D*E : 0.124
γ1 : 0.0568 (0.0912) R2dN8 : 0.000832 R2N8 : -0.00761
σ : 0.762
deviance : 267.77
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_____
C
peak time of C : --
E
wheather : wind
threshold : 6.639
memory length : 4323
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18
open length of G : 3.15

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
257.89 0.755 3.27 -0.0857 0.294 -1.75 -1.53 -9.45 0.0405 6.54 6.666 4323 18 3.07
366.63 0.892 3.26 -0.0594 0.179 -1.15 -1.52 -- 0.0626 6.44 6.605 7217 18.2 3.05
262.58 0.755 3.28 -0.0292 0.345 -1.74 -- -9.36 0.0536 6.71 6.621 4316 18 3.14
336.6 0.854 3.24 -0.0412 0.189 -1.3 -- -- 0.053 6.14 6.061 10087 18.3 3.13
267.77 0.762 3.28 -0.0815 -- -1.8 -- -9.33 0.0568 -- 6.639 4323 18 3.15
393.86 0.93 3.2 -0.234 0.388 -- -0.828 -- -0.0118 7.98 -- -- -- --
395.15 0.931 3.2 -0.252 0.394 -- -- -- -0.00835 9.07 -- -- -- --
318.12 0.831 3.27 -0.032 -- -1.78 -- -- 0.0162 -- 7.916 10083 18.3 3.08
319.12 0.832 3.24 -- 0.185 -1.3 -- -- 0.0559 6.26 7.987 10079 18.4 3.06
404.11 0.939 3.21 -0.253 -- -- -- -- -0.00607 -- -- -- -- --
396.82 0.932 3.19 -- 0.394 -- -- -- 0.0197 9.12 -- -- -- --
315.7 0.828 3.26 -- -- -1.96 -- -- 0.0269 -- 8 10088 18.5 3
405.79 0.94 3.2 -- -- -- -- -- 0.022 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 264.06 wind 7 4320 < th dose independent rect. 18 3
3 264.58 wind 5 4320 > th dose dependent rect. 18 5
4 264.68 humidity 90 1440 < th dose dependent rect. 3 1
13 267.40 wind 7 4320 > th dose independent rect. 18 3
14 267.44 wind 7 4320 < th dose independent rect. 18 9
24 270.50 wind 9 4320 > th dose dependent rect. 18 3
32 272.36 wind 7 4320 > th dose independent rect. 18 9
39 273.61 wind 7 4320 > th dose dependent rect. 18 9
47 274.13 wind 5 4320 > th dose independent rect. 21 1
48 274.37 wind 9 4320 > th dose dependent rect. 20 1
58 275.25 humidity 90 1440 < th dose dependent rect. 2 5
65 275.71 humidity 90 1440 < th dose dependent rect. 24 7
157 280.55 atmosphere 995 14400 < th dose independent rect. 16 1
159 280.61 atmosphere 995 14400 < th dose dependent rect. 16 1
167 280.70 atmosphere 995 14400 < th dose independent rect. 18 1
173 280.70 atmosphere 995 14400 < th dose dependent rect. 18 1
182 280.82 atmosphere 995 14400 > th dose independent rect. 16 3
241 282.95 atmosphere 995 14400 > th dose independent rect. 13 6
258 283.06 atmosphere 995 14400 > th dose independent rect. 11 8
297 283.99 humidity 90 1440 < th dose dependent rect. 5 1
381 286.64 temperature 20 720 < th dose independent rect. 18 2
399 287.41 temperature 20 1440 > th dose independent rect. 18 1
424 288.42 temperature 20 720 < th dose independent rect. 12 8
429 288.63 temperature 20 720 < th dose independent rect. 16 4
436 289.04 humidity 50 1440 > th dose dependent rect. 3 1
455 290.12 atmosphere 995 14400 < th dose dependent rect. 3 14
457 290.25 atmosphere 995 14400 < th dose independent rect. 18 22
458 290.26 atmosphere 995 14400 < th dose dependent sin 1 NA
460 290.37 atmosphere 995 14400 < th dose independent rect. 4 11
461 290.37 atmosphere 995 14400 < th dose independent rect. 24 16
462 290.37 atmosphere 995 14400 > th dose independent rect. 18 22
465 290.42 atmosphere 995 14400 > th dose independent rect. 22 18
472 290.45 atmosphere 995 14400 > th dose independent rect. 2 13
501 290.64 atmosphere 995 14400 > th dose independent sin 4 NA
502 290.68 humidity 50 1440 > th dose dependent rect. 1 6
518 290.82 atmosphere 995 14400 < th dose dependent rect. 14 11
526 290.82 atmosphere 995 14400 < th dose dependent rect. 5 19
529 290.83 atmosphere 995 14400 < th dose independent sin 4 NA
563 290.94 atmosphere 995 14400 < th dose dependent sin 19 NA
678 292.01 atmosphere 995 14400 > th dose independent rect. 8 22
681 292.02 atmosphere 995 14400 > th dose independent rect. 10 20
685 292.03 atmosphere 995 14400 > th dose independent no NA NA
689 292.03 atmosphere 995 14400 > th dose independent rect. 12 23
690 292.03 atmosphere 995 14400 > th dose independent rect. 14 23
695 292.04 atmosphere 995 14400 > th dose independent rect. 12 18
719 292.08 atmosphere 995 14400 > th dose independent rect. 24 23
723 292.09 atmosphere 995 14400 > th dose independent rect. 2 23
756 292.22 atmosphere 995 14400 > th dose independent sin 22 NA
758 292.22 atmosphere 995 14400 < th dose independent sin 22 NA
791 292.32 atmosphere 995 14400 < th dose independent no NA NA
793 292.32 atmosphere 995 14400 < th dose independent rect. 14 16
863 292.37 atmosphere 995 14400 > th dose independent rect. 14 21
867 292.37 atmosphere 995 14400 < th dose independent rect. 1 23
874 292.38 atmosphere 995 14400 > th dose independent rect. 14 16