Os07g0239600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os07g0239600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 139.04 | 0.554 | 5.84 | 0.841 | 2.34 | 0.919 | 0.484 | -0.41 | 0.424 | 19.5 | 26.76 | 131 | -- | -- |
| 139.08 | 0.549 | 5.83 | 0.866 | 2.34 | 0.877 | 0.495 | -- | 0.427 | 19.5 | 26.7 | 131 | -- | -- |
| 139.66 | 0.55 | 5.83 | 0.834 | 2.33 | 0.94 | -- | -0.3 | 0.427 | 19.5 | 26.93 | 132 | -- | -- |
| 139.68 | 0.55 | 5.83 | 0.865 | 2.33 | 0.91 | -- | -- | 0.434 | 19.5 | 26.91 | 134 | -- | -- |
| 326.52 | 0.842 | 5.85 | 0.298 | -- | 2.45 | -- | -1.46 | 0.0671 | -- | 24.5 | 434 | -- | -- |
| 150.59 | 0.575 | 5.83 | 1 | 2.53 | -- | 0.767 | -- | 0.442 | 19.1 | -- | -- | -- | -- |
| 152.14 | 0.578 | 5.83 | 0.986 | 2.53 | -- | -- | -- | 0.444 | 19.1 | -- | -- | -- | -- |
| 327.71 | 0.843 | 5.82 | 0.533 | -- | 2.37 | -- | -- | 0.185 | -- | 24.5 | 445 | -- | -- |
| 158.79 | 0.587 | 5.84 | -- | 2.26 | 1.13 | -- | -- | 0.362 | 19.7 | 26.29 | 136 | -- | -- |
| 490.49 | 1.03 | 5.78 | 0.939 | -- | -- | -- | -- | 0.399 | -- | -- | -- | -- | -- |
| 177.78 | 0.624 | 5.86 | -- | 2.52 | -- | -- | -- | 0.334 | 19.2 | -- | -- | -- | -- |
| 334.98 | 0.852 | 5.84 | -- | -- | 2.45 | -- | -- | 0.121 | -- | 24.5 | 457 | -- | -- |
| 513.73 | 1.06 | 5.8 | -- | -- | -- | -- | -- | 0.295 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 129.60 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 13 |
| 17 | 133.19 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 10 | 6 |
| 24 | 133.62 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 3 |
| 25 | 133.62 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 6 | 6 |
| 32 | 133.92 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 23 | 11 |
| 33 | 133.94 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 3 | 4 |
| 42 | 134.22 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 7 | 5 |
| 50 | 134.52 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 51 | 134.53 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 6 | 13 |
| 66 | 134.74 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 14 |
| 72 | 134.84 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 12 | 8 |
| 74 | 134.92 | wind | 7.0 | 270 | < th | dose independent | rect. | 10 | 21 |
| 82 | 135.05 | temperature | 10.0 | 270 | > th | dose dependent | sin | 1 | NA |
| 89 | 135.11 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 5 | 7 |
| 108 | 135.25 | radiation | 10.0 | 30 | > th | dose independent | rect. | 6 | 7 |
| 125 | 135.31 | temperature | 30.0 | 270 | < th | dose independent | rect. | 15 | 21 |
| 128 | 135.32 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 13 | 7 |
| 143 | 135.46 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 12 |
| 162 | 135.64 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 4 | 1 |
| 163 | 135.65 | temperature | 15.0 | 10 | > th | dose independent | rect. | 20 | 17 |
| 248 | 135.99 | humidity | 80.0 | 90 | > th | dose independent | rect. | 23 | 11 |
| 286 | 136.15 | radiation | 10.0 | 10 | > th | dose dependent | sin | 8 | NA |
| 298 | 136.19 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 4 |
| 304 | 136.22 | wind | 7.0 | 90 | < th | dose independent | rect. | 12 | 19 |
| 312 | 136.27 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 10 | 21 |
| 313 | 136.28 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 10 | 23 |
| 339 | 136.34 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 9 | 14 |
| 342 | 136.35 | temperature | 25.0 | 270 | > th | dose independent | rect. | 10 | 7 |
| 382 | 136.52 | temperature | 30.0 | 270 | < th | dose independent | rect. | 6 | 6 |
| 406 | 136.62 | wind | 1.0 | 90 | > th | dose independent | rect. | 7 | 5 |
| 418 | 136.66 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 3 |
| 439 | 136.75 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 21 | 10 |
| 459 | 136.85 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 14 |
| 491 | 136.96 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 3 |
| 504 | 137.01 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 10 | 7 |
| 507 | 137.02 | temperature | 10.0 | 90 | > th | dose independent | rect. | 7 | 5 |
| 508 | 137.02 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 7 | 5 |
| 509 | 137.02 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 7 | 5 |
| 510 | 137.02 | temperature | 10.0 | 90 | > th | dose independent | rect. | 12 | 19 |
| 513 | 137.03 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 7 | 5 |
| 515 | 137.03 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 7 | 5 |
| 519 | 137.03 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 13 | 18 |
| 520 | 137.04 | temperature | 25.0 | 90 | > th | dose dependent | sin | 22 | NA |
| 534 | 137.10 | temperature | 30.0 | 270 | < th | dose dependent | sin | 1 | NA |
| 568 | 137.17 | radiation | 20.0 | 90 | < th | dose independent | rect. | 23 | 10 |
| 595 | 137.23 | humidity | 70.0 | 270 | > th | dose independent | rect. | 21 | 10 |
| 614 | 137.27 | radiation | 20.0 | 270 | < th | dose independent | rect. | 21 | 10 |
| 640 | 137.31 | temperature | 30.0 | 270 | < th | dose independent | rect. | 5 | 22 |
| 654 | 137.34 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 14 |
| 669 | 137.39 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 12 | 19 |
| 673 | 137.39 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 12 | 19 |
| 685 | 137.42 | wind | 7.0 | 270 | < th | dose independent | rect. | 10 | 7 |
| 708 | 137.47 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 10 | 7 |
| 729 | 137.54 | wind | 7.0 | 90 | < th | dose independent | rect. | 12 | 7 |
| 747 | 137.59 | wind | 1.0 | 10 | > th | dose independent | rect. | 13 | 18 |
| 753 | 137.60 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 7 | 6 |
| 755 | 137.60 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 7 | 6 |
| 769 | 137.63 | wind | 9.0 | 90 | < th | dose independent | rect. | 7 | 5 |
| 779 | 137.65 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 23 | 10 |
| 794 | 137.67 | temperature | 10.0 | 10 | > th | dose independent | rect. | 7 | 6 |
| 796 | 137.67 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 7 | 6 |
| 797 | 137.67 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 7 | 6 |
| 798 | 137.67 | wind | 9.0 | 270 | < th | dose independent | rect. | 21 | 10 |
| 799 | 137.67 | temperature | 10.0 | 10 | > th | dose independent | rect. | 13 | 18 |
| 810 | 137.68 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 10 |
| 811 | 137.68 | temperature | 30.0 | 270 | < th | dose independent | rect. | 21 | 10 |
| 812 | 137.68 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 10 |
| 814 | 137.68 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 10 |
| 816 | 137.68 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 14 |
| 825 | 137.70 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 828 | 137.70 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 830 | 137.70 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 14 | 18 |
| 900 | 137.81 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 20 | 17 |
| 902 | 137.81 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 9 | 14 |
| 907 | 137.82 | wind | 9.0 | 270 | < th | dose dependent | rect. | 10 | 8 |
| 947 | 137.88 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 19 | 17 |
| 964 | 137.90 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 16 | 9 |
| 978 | 137.93 | wind | 9.0 | 90 | < th | dose dependent | rect. | 12 | 7 |
| 989 | 137.96 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 3 |
| 990 | 137.96 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 3 |
| 991 | 137.96 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 3 |
| 992 | 137.96 | temperature | 10.0 | 270 | > th | dose independent | rect. | 10 | 21 |
| 996 | 137.97 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 3 |
| 999 | 137.97 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 3 |