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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0238500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.05 (0.016) R2 : 5.74e-06
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00172 (0.0337) R2dN8 : 7.42e-06 R2N8 : 5.74e-06
σ : 0.301
deviance : 41.66
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
39.15 0.294 3.06 0.167 0.197 -0.148 0.111 -0.456 -0.0185 5.21 90 230 -- --
39.81 0.294 3.05 0.147 0.205 -0.168 -0.0599 -- -0.0285 5.56 90 293 -- --
39.17 0.291 3.06 0.165 0.192 -0.141 -- -0.423 -0.0185 5.06 90.27 218 -- --
39.75 0.294 3.05 0.137 0.204 -0.184 -- -- -0.0289 5.2 92 248 -- --
40.2 0.297 3.05 0.143 -- 0.038 -- -0.418 0.0264 -- 90 180 -- --
40.64 0.299 3.05 0.105 0.0689 -- -0.374 -- 0.00694 3.64 -- -- -- --
40.9 0.299 3.05 0.111 0.0901 -- -- -- 0.00886 6.1 -- -- -- --
41 0.298 3.05 0.129 -- -0.0834 -- -- -0.00582 -- 93.18 177 -- --
40.23 0.295 3.05 -- 0.195 -0.165 -- -- -0.0399 5.37 91.47 243 -- --
41.32 0.3 3.05 0.114 -- -- -- -- 0.0109 -- -- -- -- --
41.22 0.3 3.05 -- 0.0917 -- -- -- -0.0035 6.04 -- -- -- --
41.42 0.3 3.05 -- -- -0.0714 -- -- -0.0157 -- 93.25 180 -- --
41.66 0.301 3.05 -- -- -- -- -- -0.00172 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 30.42 wind 3.0 30 < th dose dependent rect. 2 1
2 30.42 temperature 20.0 30 > th dose dependent rect. 2 1
4 30.43 atmosphere 1005.0 30 > th dose dependent rect. 2 1
7 30.45 temperature 25.0 30 < th dose independent rect. 2 1
9 30.46 wind 3.0 30 < th dose independent rect. 2 1
10 30.46 temperature 20.0 30 > th dose independent rect. 2 1
12 30.47 humidity 80.0 30 > th dose independent rect. 2 1
14 30.49 wind 9.0 30 < th dose independent rect. 2 1
15 30.49 temperature 10.0 30 > th dose independent rect. 2 1
18 30.49 humidity 50.0 30 > th dose independent rect. 2 1
21 30.49 atmosphere 995.0 30 > th dose independent rect. 2 1
22 30.49 atmosphere 1010.0 30 < th dose independent rect. 2 1
24 30.49 radiation 1.0 30 < th dose independent rect. 2 1
29 30.49 precipitation 0.1 30 < th dose independent rect. 2 1
30 30.49 temperature 10.0 30 > th dose independent rect. 3 23
31 30.49 humidity 50.0 30 > th dose dependent rect. 2 1
34 30.49 radiation 1.0 30 < th dose dependent rect. 2 1
39 30.49 precipitation 0.1 30 < th dose dependent rect. 2 1
45 30.55 atmosphere 1005.0 30 > th dose independent rect. 2 1
48 30.63 atmosphere 1015.0 30 < th dose dependent rect. 2 1
49 30.76 temperature 30.0 30 < th dose dependent rect. 2 1
53 31.11 wind 9.0 30 < th dose independent rect. 3 23
56 31.24 wind 1.0 30 > th dose independent rect. 2 1
110 34.76 atmosphere 995.0 30 > th dose independent rect. 3 23
114 35.14 precipitation 0.1 30 < th dose independent rect. 3 23
115 35.14 precipitation 0.1 30 < th dose dependent rect. 3 23
128 36.11 wind 1.0 30 < th dose independent rect. 24 3
134 36.48 wind 9.0 4320 < th dose independent rect. 3 1
135 36.50 radiation 20.0 10 < th dose dependent rect. 3 23
138 36.51 temperature 10.0 1440 > th dose independent rect. 3 1
141 36.51 temperature 30.0 1440 < th dose independent rect. 3 1
145 36.51 humidity 50.0 1440 > th dose independent rect. 3 1
154 36.51 atmosphere 995.0 1440 > th dose independent rect. 3 1
155 36.51 radiation 1.0 1440 < th dose independent rect. 3 1
175 36.51 temperature 10.0 1440 > th dose independent rect. 4 23
178 36.51 radiation 1.0 1440 < th dose dependent rect. 3 1
195 36.59 atmosphere 1015.0 30 < th dose independent rect. 3 23
198 36.64 temperature 25.0 90 > th dose dependent rect. 1 3
211 36.85 humidity 50.0 30 > th dose independent rect. 3 23
214 36.93 atmosphere 1015.0 1440 < th dose independent rect. 3 1
222 37.08 humidity 90.0 90 < th dose independent rect. 2 1
223 37.08 radiation 10.0 10 < th dose independent rect. 3 23
231 37.23 wind 3.0 10 < th dose dependent rect. 22 5
237 37.28 temperature 10.0 30 > th dose dependent rect. 3 23
240 37.32 atmosphere 1000.0 90 > th dose independent rect. 3 16
242 37.34 wind 1.0 10 < th dose independent rect. 14 13
243 37.35 wind 1.0 10 < th dose independent rect. 17 10
265 37.52 wind 9.0 30 < th dose dependent rect. 3 23
293 37.57 temperature 25.0 270 > th dose independent rect. 23 4
294 37.59 wind 1.0 30 > th dose dependent rect. 2 1
302 37.64 atmosphere 1000.0 30 > th dose independent rect. 3 8
313 37.68 radiation 30.0 30 < th dose independent rect. 3 8
348 37.85 radiation 40.0 30 < th dose dependent rect. 3 8
375 37.91 humidity 50.0 30 > th dose dependent rect. 3 8
377 37.92 radiation 40.0 30 < th dose independent rect. 11 16
386 37.95 atmosphere 995.0 30 > th dose dependent rect. 3 8
388 37.96 humidity 60.0 720 > th dose independent rect. 19 8
392 37.97 wind 7.0 90 < th dose independent rect. 3 16
395 37.98 temperature 30.0 30 < th dose independent rect. 3 8
407 38.07 temperature 15.0 720 > th dose independent rect. 7 8
409 38.07 temperature 15.0 720 > th dose independent rect. 3 16
417 38.09 wind 3.0 10 < th dose dependent rect. 11 16
421 38.11 temperature 15.0 90 > th dose independent rect. 3 16
422 38.11 temperature 15.0 720 > th dose independent rect. 15 16
436 38.14 temperature 15.0 720 > th dose independent rect. 3 8
443 38.15 temperature 15.0 720 > th dose independent rect. 19 8
451 38.17 atmosphere 1015.0 720 < th dose independent rect. 3 8
452 38.17 humidity 70.0 30 > th dose dependent rect. 20 7
456 38.18 wind 5.0 90 < th dose independent rect. 19 8
476 38.21 temperature 25.0 270 < th dose independent rect. 23 8
480 38.22 radiation 40.0 720 < th dose independent rect. 15 16
486 38.22 atmosphere 995.0 90 > th dose dependent rect. 3 16
487 38.23 atmosphere 1000.0 10 < th dose independent rect. 7 5
507 38.26 wind 1.0 10 > th dose independent rect. 12 23
511 38.27 wind 9.0 720 < th dose independent rect. 19 8
515 38.27 atmosphere 995.0 90 > th dose dependent rect. 19 8
519 38.28 atmosphere 1000.0 90 > th dose independent rect. 3 12
521 38.28 wind 9.0 30 < th dose dependent rect. 3 8
524 38.28 humidity 50.0 30 > th dose dependent rect. 3 23
537 38.31 wind 9.0 720 < th dose independent rect. 3 8
538 38.31 precipitation 0.1 90 < th dose independent rect. 19 8
544 38.31 precipitation 0.1 90 < th dose dependent rect. 19 8
545 38.32 humidity 70.0 10 > th dose independent rect. 3 7
555 38.33 temperature 30.0 720 < th dose independent rect. 19 8
557 38.33 atmosphere 995.0 720 > th dose independent rect. 19 8
558 38.33 radiation 1.0 720 < th dose independent rect. 19 8
564 38.33 atmosphere 1015.0 720 < th dose independent rect. 3 16
570 38.33 radiation 1.0 720 < th dose dependent rect. 19 8
592 38.35 temperature 10.0 90 > th dose independent rect. 19 8
594 38.35 temperature 30.0 90 < th dose independent rect. 19 8
595 38.35 humidity 50.0 90 > th dose independent rect. 19 8
597 38.35 atmosphere 995.0 90 > th dose independent rect. 19 8
598 38.35 radiation 1.0 90 < th dose independent rect. 19 8
604 38.35 temperature 15.0 720 > th dose independent rect. 23 16
605 38.35 atmosphere 1015.0 90 < th dose independent rect. 3 16
606 38.35 temperature 25.0 270 > th dose dependent rect. 23 7
609 38.35 radiation 1.0 90 < th dose dependent rect. 19 8
614 38.35 radiation 40.0 30 < th dose dependent rect. 11 16
617 38.36 atmosphere 1015.0 90 < th dose independent rect. 19 8
639 38.38 atmosphere 1015.0 720 < th dose independent rect. 7 8
649 38.39 wind 9.0 720 < th dose independent rect. 7 8
662 38.40 atmosphere 1005.0 30 > th dose independent rect. 20 7
676 38.41 temperature 10.0 30 > th dose dependent rect. 3 17
679 38.42 temperature 15.0 720 > th dose independent rect. 15 8
680 38.42 atmosphere 995.0 720 > th dose independent rect. 3 8
681 38.42 temperature 10.0 720 > th dose independent rect. 11 16
682 38.42 precipitation 0.1 30 < th dose independent rect. 11 16
684 38.42 precipitation 0.1 30 < th dose dependent rect. 11 16
697 38.44 atmosphere 1015.0 30 < th dose independent rect. 11 16
706 38.45 wind 7.0 30 < th dose independent rect. 3 8
708 38.45 temperature 10.0 30 > th dose independent rect. 3 8
713 38.45 atmosphere 1015.0 30 < th dose independent rect. 3 8
715 38.45 temperature 10.0 30 > th dose independent rect. 11 16
736 38.46 humidity 80.0 4320 < th dose dependent rect. 1 1
756 38.49 precipitation 0.1 90 < th dose independent rect. 3 16
766 38.49 temperature 10.0 30 > th dose dependent rect. 20 7
769 38.49 precipitation 0.1 90 < th dose dependent rect. 3 16
772 38.50 wind 9.0 720 < th dose independent rect. 3 16
779 38.51 wind 9.0 720 < th dose independent rect. 15 16
785 38.52 humidity 90.0 10 > th dose independent rect. 24 3
786 38.52 humidity 50.0 720 > th dose independent rect. 23 16
795 38.53 radiation 40.0 720 < th dose independent rect. 15 8
799 38.53 atmosphere 1005.0 10 < th dose dependent rect. 7 5
806 38.54 wind 9.0 30 < th dose independent rect. 11 16
807 38.54 wind 1.0 10 > th dose independent rect. 12 21
816 38.55 humidity 50.0 720 > th dose independent rect. 3 8
817 38.55 precipitation 0.1 30 < th dose independent rect. 3 8
818 38.55 humidity 50.0 90 > th dose independent rect. 3 16
821 38.55 precipitation 0.1 30 < th dose dependent rect. 3 8
825 38.56 humidity 90.0 270 < th dose independent rect. 20 16
828 38.56 humidity 80.0 30 > th dose dependent rect. 22 5
841 38.57 humidity 90.0 720 < th dose independent rect. 24 3
842 38.57 atmosphere 995.0 4320 > th dose independent rect. 12 3
859 38.58 humidity 90.0 270 < th dose independent rect. 22 14
879 38.59 wind 1.0 10 > th dose independent rect. 16 15
880 38.59 wind 1.0 10 > th dose independent rect. 12 19
897 38.61 atmosphere 995.0 4320 > th dose independent rect. 12 5
903 38.61 atmosphere 1000.0 90 < th dose independent rect. 6 9
943 38.62 wind 9.0 30 < th dose dependent rect. 3 17
963 38.63 humidity 90.0 10 > th dose independent rect. 22 5
979 38.63 radiation 1.0 1440 < th dose dependent rect. 21 7
983 38.64 temperature 25.0 1440 < th dose independent rect. 1 1