Os07g0238400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os07g0238400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.54 | 0.44 | 3.49 | 0.182 | 0.584 | 0.685 | 0.643 | 0.784 | -0.535 | 20.3 | 20.38 | 1490 | -- | -- |
| 88.88 | 0.439 | 3.51 | 0.0491 | 0.579 | 0.639 | 0.527 | -- | -0.57 | 20 | 20.3 | 1478 | -- | -- |
| 88.76 | 0.439 | 3.48 | 0.17 | 0.578 | 0.704 | -- | 0.825 | -0.528 | 20.4 | 20.4 | 1499 | -- | -- |
| 89.82 | 0.441 | 3.51 | 0.0225 | 0.585 | 0.588 | -- | -- | -0.559 | 20.5 | 20.3 | 1500 | -- | -- |
| 106.01 | 0.48 | 3.48 | 0.111 | -- | 0.647 | -- | 0.384 | -0.575 | -- | 20.4 | 781 | -- | -- |
| 95.39 | 0.458 | 3.48 | 0.284 | 0.585 | -- | 0.705 | -- | -0.438 | 20.3 | -- | -- | -- | -- |
| 96.82 | 0.461 | 3.48 | 0.261 | 0.581 | -- | -- | -- | -0.439 | 20.6 | -- | -- | -- | -- |
| 106.15 | 0.48 | 3.49 | 0.054 | -- | 0.551 | -- | -- | -0.574 | -- | 20.74 | 720 | -- | -- |
| 89.83 | 0.441 | 3.51 | -- | 0.585 | 0.599 | -- | -- | -0.568 | 20.5 | 20.3 | 1500 | -- | -- |
| 115.83 | 0.503 | 3.46 | 0.259 | -- | -- | -- | -- | -0.444 | -- | -- | -- | -- | -- |
| 98.62 | 0.465 | 3.49 | -- | 0.58 | -- | -- | -- | -0.468 | 20.6 | -- | -- | -- | -- |
| 106.2 | 0.48 | 3.5 | -- | -- | 0.567 | -- | -- | -0.583 | -- | 20.7 | 765 | -- | -- |
| 117.6 | 0.506 | 3.47 | -- | -- | -- | -- | -- | -0.473 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 81.92 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 2 |
| 2 | 82.00 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 3 | 82.01 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 10 | 82.53 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 7 |
| 17 | 82.74 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 21 | 10 |
| 19 | 82.83 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 25 | 82.92 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 2 |
| 34 | 83.03 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 37 | 83.09 | wind | 3.0 | 14400 | < th | dose independent | rect. | 23 | 5 |
| 40 | 83.11 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 51 | 83.22 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 9 |
| 56 | 83.24 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 11 | 7 |
| 62 | 83.31 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 64 | 83.31 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 9 | 8 |
| 77 | 83.41 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 11 |
| 84 | 83.42 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 13 | 5 |
| 86 | 83.43 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 6 |
| 100 | 83.48 | temperature | 25.0 | 270 | < th | dose independent | rect. | 11 | 17 |
| 105 | 83.51 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 3 |
| 127 | 83.61 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 138 | 83.64 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 141 | 83.64 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 145 | 83.66 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 146 | 83.66 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 156 | 83.69 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 209 | 83.88 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 212 | 83.88 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 237 | 83.97 | wind | 3.0 | 14400 | < th | dose dependent | sin | 9 | NA |
| 257 | 84.05 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 258 | 84.05 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 261 | 84.07 | wind | 3.0 | 14400 | < th | dose independent | sin | 9 | NA |
| 320 | 84.20 | wind | 3.0 | 14400 | > th | dose independent | sin | 9 | NA |
| 451 | 84.54 | radiation | 1.0 | 720 | < th | dose independent | rect. | 14 | 1 |
| 454 | 84.54 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 14 | 1 |
| 461 | 84.56 | wind | 1.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 487 | 84.60 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 22 | 9 |
| 529 | 84.69 | humidity | 80.0 | 1440 | > th | dose independent | sin | 2 | NA |
| 530 | 84.69 | humidity | 80.0 | 1440 | < th | dose independent | sin | 2 | NA |
| 585 | 84.79 | wind | 3.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 621 | 84.85 | radiation | 1.0 | 720 | > th | dose independent | rect. | 9 | 7 |
| 656 | 84.89 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 735 | 85.04 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 13 | 13 |
| 761 | 85.09 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 786 | 85.13 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 792 | 85.13 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 12 | 16 |
| 815 | 85.17 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 849 | 85.21 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 2 | 5 |
| 860 | 85.23 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 16 | NA |
| 871 | 85.25 | temperature | 25.0 | 10 | < th | dose independent | rect. | 12 | 17 |
| 872 | 85.25 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 942 | 85.33 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 957 | 85.36 | temperature | 25.0 | 270 | < th | dose independent | sin | 17 | NA |
| 987 | 85.40 | wind | 1.0 | 14400 | > th | dose dependent | sin | 9 | NA |