Os07g0237200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Rapid ALkalinization Factor family protein.
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Os07g0237200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Rapid ALkalinization Factor family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 193.29 | 0.653 | 4.85 | 0.0948 | 0.779 | 3.26 | -0.453 | 6.01 | -0.109 | 15.7 | 19.8 | 4611 | -- | -- |
| 211.7 | 0.683 | 4.73 | -0.181 | 0.827 | 0.749 | -0.511 | -- | -0.214 | 15.5 | 19.8 | 4611 | -- | -- |
| 193.86 | 0.648 | 4.85 | 0.106 | 0.778 | 3.34 | -- | 6.14 | -0.113 | 15.7 | 19.7 | 4636 | -- | -- |
| 200.14 | 0.659 | 4.7 | 0.0744 | 0.745 | 0.982 | -- | -- | -0.0348 | 15.9 | 23.84 | 2229 | -- | -- |
| 225.75 | 0.7 | 4.85 | 0.0514 | -- | 3.23 | -- | 5.77 | -0.125 | -- | 19.56 | 4028 | -- | -- |
| 214.88 | 0.687 | 4.75 | -0.293 | 0.794 | -- | -0.452 | -- | -0.256 | 15.7 | -- | -- | -- | -- |
| 215.49 | 0.687 | 4.75 | -0.3 | 0.793 | -- | -- | -- | -0.259 | 15.7 | -- | -- | -- | -- |
| 228.38 | 0.704 | 4.69 | 0.00898 | -- | 1.19 | -- | -- | -0.0213 | -- | 25.67 | 1081 | -- | -- |
| 200.18 | 0.659 | 4.7 | -- | 0.765 | 0.912 | -- | -- | -0.0381 | 16.1 | 24.67 | 2205 | -- | -- |
| 250.27 | 0.739 | 4.75 | -0.333 | -- | -- | -- | -- | -0.28 | -- | -- | -- | -- | -- |
| 217.86 | 0.69 | 4.74 | -- | 0.799 | -- | -- | -- | -0.225 | 15.7 | -- | -- | -- | -- |
| 228.37 | 0.704 | 4.69 | -- | -- | 1.18 | -- | -- | -0.0211 | -- | 25.7 | 1071 | -- | -- |
| 253.2 | 0.743 | 4.74 | -- | -- | -- | -- | -- | -0.243 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 190.71 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 2 | 191.11 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 3 | 191.17 | temperature | 20 | 4320 | < th | dose dependent | rect. | 2 | 1 |
| 4 | 191.22 | humidity | 80 | 4320 | < th | dose dependent | rect. | 21 | 14 |
| 8 | 191.35 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 4 |
| 39 | 191.91 | humidity | 60 | 14400 | < th | dose dependent | rect. | 11 | 4 |
| 44 | 191.98 | humidity | 60 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 57 | 192.22 | humidity | 60 | 14400 | < th | dose dependent | rect. | 8 | 8 |
| 61 | 192.23 | humidity | 60 | 14400 | < th | dose dependent | rect. | 19 | 21 |
| 91 | 192.28 | humidity | 60 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 105 | 192.42 | humidity | 60 | 14400 | < th | dose dependent | sin | 3 | NA |
| 110 | 192.46 | humidity | 80 | 4320 | < th | dose dependent | sin | 8 | NA |
| 158 | 192.72 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 20 |
| 164 | 192.73 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 192 | 192.80 | temperature | 20 | 4320 | < th | dose dependent | rect. | 12 | 18 |
| 213 | 192.90 | humidity | 60 | 14400 | < th | dose dependent | rect. | 11 | 23 |
| 219 | 192.91 | temperature | 20 | 4320 | < th | dose dependent | rect. | 24 | 14 |
| 243 | 192.93 | temperature | 20 | 4320 | < th | dose dependent | sin | 9 | NA |
| 271 | 192.95 | humidity | 60 | 14400 | < th | dose dependent | no | NA | NA |
| 334 | 192.97 | wind | 1 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 357 | 193.01 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 361 | 193.01 | humidity | 60 | 14400 | < th | dose dependent | rect. | 14 | 23 |
| 375 | 193.08 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 405 | 193.15 | wind | 1 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 436 | 193.24 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 487 | 193.40 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 584 | 193.73 | humidity | 50 | 4320 | > th | dose independent | rect. | 13 | 4 |
| 586 | 193.73 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 7 |
| 601 | 193.79 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 607 | 193.81 | humidity | 50 | 4320 | > th | dose independent | rect. | 13 | 22 |
| 610 | 193.83 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 635 | 193.91 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 7 |
| 651 | 193.94 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 5 |
| 653 | 193.94 | wind | 5 | 4320 | < th | dose independent | rect. | 20 | 6 |
| 654 | 193.94 | humidity | 50 | 4320 | > th | dose independent | rect. | 12 | 16 |
| 663 | 193.95 | humidity | 50 | 4320 | > th | dose independent | rect. | 12 | 13 |
| 678 | 193.97 | radiation | 30 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 689 | 193.97 | humidity | 80 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 727 | 194.02 | humidity | 50 | 4320 | < th | dose independent | rect. | 13 | 22 |
| 729 | 194.02 | temperature | 20 | 4320 | < th | dose dependent | no | NA | NA |
| 732 | 194.02 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 9 |
| 765 | 194.08 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 766 | 194.08 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 9 | 13 |
| 774 | 194.11 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 11 | 11 |
| 775 | 194.11 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 11 | 11 |
| 776 | 194.11 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 9 | 14 |
| 780 | 194.12 | humidity | 50 | 4320 | < th | dose independent | sin | 18 | NA |
| 785 | 194.13 | humidity | 50 | 4320 | < th | dose independent | rect. | 13 | 4 |
| 786 | 194.13 | humidity | 70 | 4320 | < th | dose independent | rect. | 6 | 6 |
| 802 | 194.14 | atmosphere | 1015 | 4320 | < th | dose independent | sin | 21 | NA |
| 804 | 194.14 | humidity | 50 | 4320 | < th | dose independent | rect. | 12 | 6 |
| 824 | 194.15 | humidity | 70 | 4320 | > th | dose independent | rect. | 7 | 5 |
| 836 | 194.16 | humidity | 70 | 4320 | > th | dose independent | rect. | 23 | 13 |
| 841 | 194.17 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 7 |
| 849 | 194.18 | atmosphere | 1015 | 4320 | > th | dose independent | sin | 21 | NA |
| 861 | 194.19 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 9 | 14 |
| 889 | 194.25 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 907 | 194.28 | humidity | 50 | 4320 | > th | dose independent | sin | 18 | NA |
| 928 | 194.28 | atmosphere | 1015 | 4320 | > th | dose dependent | sin | 21 | NA |
| 931 | 194.29 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 6 |
| 988 | 194.33 | humidity | 50 | 4320 | < th | dose dependent | sin | 13 | NA |
| 995 | 194.34 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 9 | 5 |