Os07g0231900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase, trypsin-like serine and cysteine domain containing protein.
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Os07g0231900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase, trypsin-like serine and cysteine domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.84 | 0.412 | 6.85 | -2.18 | 0.74 | 2.4 | -0.329 | 8.63 | 0.242 | 22.1 | 0.9703 | 4321 | -- | -- |
| 102.02 | 0.47 | 6.57 | -0.702 | 0.991 | 1.24 | -0.04 | -- | 0.701 | 22.3 | 6.083 | 19825 | -- | -- |
| 77.13 | 0.409 | 6.85 | -2.16 | 0.759 | 2.38 | -- | 8.55 | 0.239 | 22.3 | 0.973 | 4313 | -- | -- |
| 97.65 | 0.46 | 6.53 | -0.52 | 0.992 | 1.57 | -- | -- | 0.978 | 20.8 | 5.497 | 19460 | -- | -- |
| 96.96 | 0.459 | 6.84 | -2.12 | -- | 2.45 | -- | 8.58 | 0.252 | -- | 1.605 | 11681 | -- | -- |
| 154.45 | 0.583 | 6.69 | -0.864 | 0.716 | -- | -0.459 | -- | 0.305 | 21.8 | -- | -- | -- | -- |
| 155.25 | 0.583 | 6.69 | -0.847 | 0.718 | -- | -- | -- | 0.306 | 21.8 | -- | -- | -- | -- |
| 110.68 | 0.49 | 6.56 | -0.773 | -- | 2.02 | -- | -- | 0.696 | -- | 5.07 | 2992 | -- | -- |
| 93.83 | 0.451 | 6.56 | -- | 1 | 1.71 | -- | -- | 1.01 | 21.4 | 4.382 | 28340 | -- | -- |
| 186.01 | 0.637 | 6.67 | -0.84 | -- | -- | -- | -- | 0.305 | -- | -- | -- | -- | -- |
| 174.15 | 0.617 | 6.67 | -- | 0.716 | -- | -- | -- | 0.4 | 21.7 | -- | -- | -- | -- |
| 119.47 | 0.509 | 6.56 | -- | -- | 2.45 | -- | -- | 0.818 | -- | 4.1 | 2994 | -- | -- |
| 204.61 | 0.668 | 6.65 | -- | -- | -- | -- | -- | 0.398 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.17 | temperature | 25 | 43200 | < th | dose dependent | rect. | 14 | 3 |
| 14 | 60.59 | temperature | 20 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 19 | 60.79 | temperature | 20 | 43200 | < th | dose independent | rect. | 19 | 4 |
| 33 | 61.08 | temperature | 20 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 35 | 61.10 | temperature | 20 | 43200 | > th | dose independent | rect. | 19 | 5 |
| 48 | 61.25 | temperature | 20 | 43200 | > th | dose independent | rect. | 11 | 14 |
| 82 | 61.47 | temperature | 20 | 43200 | < th | dose independent | rect. | 12 | 13 |
| 109 | 61.57 | temperature | 20 | 43200 | > th | dose independent | sin | 18 | NA |
| 160 | 61.81 | temperature | 20 | 43200 | < th | dose independent | sin | 18 | NA |
| 166 | 61.83 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 396 | 63.15 | temperature | 20 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 409 | 63.20 | temperature | 25 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 446 | 63.34 | temperature | 25 | 43200 | < th | dose dependent | sin | 21 | NA |
| 474 | 63.43 | temperature | 20 | 43200 | > th | dose independent | rect. | 18 | 22 |
| 541 | 63.59 | temperature | 20 | 43200 | < th | dose independent | rect. | 18 | 22 |
| 570 | 63.65 | temperature | 20 | 43200 | > th | dose independent | no | NA | NA |
| 643 | 63.77 | temperature | 20 | 43200 | < th | dose independent | no | NA | NA |
| 677 | 63.85 | temperature | 20 | 43200 | < th | dose independent | rect. | 24 | 23 |
| 756 | 64.29 | temperature | 25 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 758 | 64.35 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 772 | 64.37 | temperature | 25 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 795 | 64.51 | temperature | 25 | 43200 | < th | dose independent | rect. | 13 | 3 |
| 820 | 64.63 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 824 | 64.65 | temperature | 25 | 43200 | > th | dose independent | rect. | 11 | 5 |
| 831 | 64.69 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 867 | 64.92 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 877 | 64.99 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 885 | 65.03 | temperature | 20 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 943 | 65.39 | temperature | 25 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 964 | 65.46 | humidity | 90 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 990 | 65.57 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 995 | 65.61 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 2 |