FiT-DB / Search/ Help/ Sample detail
|
Os07g0229700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to DNA-directed RNA polymerase I subunit 12 (EC 2.7.7.6) (Nuclear RNA polymerase I small specific subunit Rpa12) (Zinc ribbon domain containing protein 1).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 219.3 | 0.696 | 8.41 | -1.12 | 4.3 | 2.57 | -0.116 | -0.397 | -1.19 | 16.2 | 1.08 | 33 | 4.89 | -- |
| 219.6 | 0.69 | 8.4 | -1.11 | 4.32 | 2.6 | 0.175 | -- | -1.18 | 16.1 | 1.08 | 34 | 4.94 | -- |
| 218.95 | 0.689 | 8.4 | -1.14 | 4.32 | 2.59 | -- | -0.337 | -1.18 | 16.1 | 1.044 | 36 | 4.93 | -- |
| 219.47 | 0.69 | 8.41 | -1.13 | 4.34 | 2.57 | -- | -- | -1.18 | 16.2 | 1.07 | 36 | 4.84 | -- |
| 301.37 | 0.809 | 8.38 | -1.22 | -- | 3.56 | -- | -0.308 | -1.24 | -- | 541.9 | 94 | 12.1 | -- |
| 299.17 | 0.811 | 8.46 | -1.23 | 3.53 | -- | -0.0315 | -- | -1.26 | 18.8 | -- | -- | -- | -- |
| 299.17 | 0.81 | 8.46 | -1.23 | 3.53 | -- | -- | -- | -1.26 | 18.8 | -- | -- | -- | -- |
| 299.88 | 0.807 | 8.38 | -1.25 | -- | 3.52 | -- | -- | -1.24 | -- | 1481 | 75 | 11.9 | -- |
| 252.89 | 0.741 | 8.38 | -- | 4.36 | 2.61 | -- | -- | -1.06 | 16.1 | 0.6431 | 41 | 4.95 | -- |
| 949.68 | 1.44 | 8.39 | -1.31 | -- | -- | -- | -- | -1.33 | -- | -- | -- | -- | -- |
| 338.89 | 0.861 | 8.43 | -- | 3.54 | -- | -- | -- | -1.12 | 18.7 | -- | -- | -- | -- |
| 338.98 | 0.858 | 8.34 | -- | -- | 3.54 | -- | -- | -1.1 | -- | 3335 | 134 | 12.4 | -- |
| 994.76 | 1.47 | 8.36 | -- | -- | -- | -- | -- | -1.18 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 214.00 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 5 | 3 |
| 2 | 214.69 | wind | 5.0 | 30 | < th | dose dependent | rect. | 5 | 3 |
| 8 | 215.96 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 4 | 2 |
| 9 | 216.02 | temperature | 20.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 15 | 217.10 | wind | 3.0 | 30 | < th | dose independent | rect. | 5 | 3 |
| 25 | 219.91 | radiation | 1.0 | 30 | < th | dose dependent | sin | 11 | NA |
| 29 | 220.42 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 40 | 220.49 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 43 | 220.58 | radiation | 1.0 | 30 | < th | dose independent | sin | 11 | NA |
| 44 | 220.66 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 45 | 220.66 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 46 | 220.70 | radiation | 1.0 | 30 | > th | dose independent | sin | 11 | NA |
| 51 | 221.31 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 52 | 221.46 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 53 | 221.59 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 8 | 21 |
| 54 | 221.59 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 8 | 21 |
| 69 | 221.91 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 72 | 222.02 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 74 | 222.02 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 76 | 222.09 | wind | 7.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 79 | 222.29 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 81 | 222.29 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 82 | 222.29 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 85 | 222.29 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 90 | 222.29 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 92 | 222.34 | wind | 9.0 | 30 | < th | dose independent | rect. | 8 | 21 |
| 94 | 222.58 | radiation | 40.0 | 30 | < th | dose independent | rect. | 5 | 3 |
| 95 | 222.64 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 5 | 3 |
| 96 | 222.64 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 5 | 3 |
| 108 | 222.89 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 110 | 222.91 | temperature | 10.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 112 | 222.91 | temperature | 30.0 | 30 | < th | dose independent | rect. | 5 | 3 |
| 113 | 222.91 | humidity | 50.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 115 | 222.91 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 116 | 222.91 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 5 | 3 |
| 125 | 222.91 | temperature | 10.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 152 | 224.42 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 5 | 3 |
| 202 | 226.17 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 8 | 21 |
| 242 | 227.35 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 5 | 3 |
| 285 | 228.31 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 5 | 3 |
| 362 | 230.14 | humidity | 50.0 | 30 | > th | dose independent | rect. | 8 | 21 |
| 378 | 230.69 | temperature | 20.0 | 30 | > th | dose independent | rect. | 5 | 17 |
| 504 | 232.30 | radiation | 20.0 | 90 | < th | dose independent | rect. | 4 | 7 |
| 558 | 232.98 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 562 | 233.13 | wind | 9.0 | 90 | < th | dose dependent | rect. | 8 | 20 |
| 578 | 233.22 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 585 | 233.38 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 8 | 21 |
| 591 | 233.58 | radiation | 1.0 | 30 | > th | dose independent | rect. | 14 | 18 |
| 632 | 234.34 | wind | 9.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 633 | 234.34 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 636 | 234.34 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 638 | 234.34 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 639 | 234.34 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 640 | 234.34 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 20 |
| 681 | 235.08 | wind | 1.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 711 | 235.21 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 4 | 7 |
| 757 | 236.19 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 5 | 17 |
| 798 | 236.93 | radiation | 1.0 | 30 | > th | dose independent | rect. | 12 | 20 |
| 907 | 238.29 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 5 | 3 |
| 950 | 238.81 | temperature | 15.0 | 270 | > th | dose independent | rect. | 12 | 10 |
