FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0229200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.2 (0.0367) R2 : 0.817
β1 : 2.73 (0.144) R2dD : 0.182 R2D : -0.0192
β2 : 6.21 (0.192) R2dC : 1.89 R2C : 0.228
β3 : -3.86 (0.243) R2dE : 0.462 R2E : -1.32
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 6.56 (0.562) R2dD*E : 0.053 R2D*E : -0.00824
γ1 : 1.14 (0.081) R2dN8 : 0.116 R2N8 : -0.0253
σ : 0.674
deviance : 209.67
__
_____
C
peak time of C : 15.3
E
wheather : temperature
threshold : 8.18
memory length : 338
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.94
open length of G : 17.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
206.85 0.676 5.18 2.87 5.93 -3.58 -1.36 7.85 1.16 15.3 8.106 351 2.72 17.3
234.03 0.713 5.25 2.35 5.94 -3.35 2.58 -- 1.07 15.1 3.733 219 3.07 18.2
209.67 0.674 5.2 2.73 6.21 -3.86 -- 6.56 1.14 15.3 8.18 338 2.94 17.1
253.5 0.742 5.26 2.21 6.19 -3.46 -- -- 0.935 15.1 2.55 298 3.22 16.8
902.03 1.4 4.96 3.08 -- -3.13 -- 6.45 1.34 -- -18.02 1295 2.67 19
323.7 0.843 5.33 1.7 3.58 -- 2.48 -- 0.667 15.4 -- -- -- --
343.02 0.867 5.32 1.75 3.59 -- -- -- 0.682 15.4 -- -- -- --
340.9 0.86 5.06 2.31 -- -4.79 -- -- 1.1 -- -10.28 870 14 13.1
361.72 0.886 5.28 -- 6.22 -3.4 -- -- 0.656 14.9 -10.67 269 3.06 17.3
1067.45 1.53 5.32 1.6 -- -- -- -- 0.587 -- -- -- -- --
423.68 0.963 5.36 -- 3.56 -- -- -- 0.487 15.4 -- -- -- --
409.17 0.942 5.34 -- -- -3.66 -- -- 0.515 -- -120 628 14.1 15.9
1134.79 1.57 5.36 -- -- -- -- -- 0.41 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 214.54 temperature 10 270 > th dose dependent rect. 3 18
2 216.55 temperature 10 270 > th dose dependent rect. 4 16
9 222.34 temperature 20 270 > th dose independent rect. 3 17
28 231.00 radiation 40 14400 < th dose dependent rect. 23 6
29 231.51 temperature 15 720 > th dose dependent rect. 3 10
32 232.16 temperature 15 720 > th dose dependent rect. 1 14
33 232.25 temperature 25 720 < th dose dependent rect. 5 4
38 233.07 temperature 20 720 > th dose independent rect. 3 10
40 233.10 temperature 15 720 > th dose dependent sin 4 NA
41 233.19 temperature 20 720 < th dose independent rect. 4 6
49 233.93 temperature 30 270 < th dose dependent rect. 9 6
58 234.34 temperature 25 720 < th dose dependent rect. 4 10
63 234.74 temperature 20 720 < th dose independent rect. 3 10
67 234.94 radiation 10 4320 < th dose independent rect. 23 6
88 235.90 temperature 20 720 > th dose independent rect. 1 14
96 236.19 temperature 25 720 < th dose dependent sin 4 NA
119 237.11 temperature 20 720 < th dose independent sin 4 NA
124 237.23 temperature 20 720 > th dose independent sin 4 NA
144 237.90 radiation 10 4320 < th dose dependent rect. 23 6
179 239.10 temperature 30 10 < th dose dependent rect. 22 18
200 240.05 temperature 25 720 < th dose dependent rect. 22 17
214 240.55 temperature 10 10 > th dose dependent rect. 5 17
230 241.03 temperature 30 270 < th dose dependent rect. 20 20
255 241.56 temperature 20 720 < th dose independent rect. 23 16
379 243.94 temperature 30 270 < th dose dependent rect. 11 2
488 245.78 humidity 80 14400 > th dose dependent rect. 19 9
514 246.22 humidity 80 14400 > th dose dependent rect. 19 12
653 247.86 humidity 80 14400 > th dose dependent sin 10 NA
725 248.48 humidity 90 14400 > th dose dependent rect. 22 2
826 249.47 humidity 50 43200 > th dose independent rect. 23 5
873 249.82 atmosphere 1010 270 < th dose independent rect. 14 7
879 249.87 atmosphere 1010 270 < th dose independent rect. 2 19
891 249.99 atmosphere 1010 270 < th dose independent rect. 3 17