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Os07g0229100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.27 (0.0282) R2 : 0.742
β1 : 0.778 (0.103) R2dD : 0.0366 R2D : 0.0194
β2 : 1.67 (0.0782) R2dC : 0.349 R2C : 0.554
β3 : -1.59 (0.111) R2dE : 0.147 R2E : 0.359
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.246 (0.0602) R2dN8 : 0.0107 R2N8 : -0.00359
σ : 0.527
deviance : 128.15
__
_____
C
peak time of C : 14.1
E
wheather : radiation
threshold : 5.302
memory length : 196
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 20.9
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
110.98 0.495 7.27 0.736 1.56 -1.74 -2.06 -2.81 0.229 14.1 0.3 251 20.3 --
121.27 0.513 7.28 0.892 1.54 -1.68 -1.56 -- 0.201 13.7 2.451 258 21.4 --
126.17 0.523 7.28 0.754 1.59 -1.71 -- -2.17 0.232 14.1 0.6696 247 20.3 --
128.15 0.527 7.27 0.778 1.67 -1.59 -- -- 0.246 14.1 5.302 196 20.9 --
152.16 0.575 7.32 0.832 -- -2.32 -- 0.0522 0.343 -- 1.34 331 3.69 --
158.22 0.59 7.3 0.848 2.38 -- -0.744 -- 0.23 15.1 -- -- -- --
160.01 0.592 7.3 0.832 2.38 -- -- -- 0.226 15.2 -- -- -- --
145.03 0.561 7.29 0.858 -- -2.26 -- -- 0.225 -- 9.235 264 3.45 --
142.54 0.556 7.3 -- 1.65 -1.53 -- -- 0.16 14.1 0.8441 258 20.6 --
481.42 1.03 7.31 0.731 -- -- -- -- 0.164 -- -- -- -- --
178.26 0.625 7.32 -- 2.36 -- -- -- 0.133 15.2 -- -- -- --
163.6 0.596 7.31 -- -- -2.25 -- -- 0.127 -- 5.12 287 3.41 --
495.52 1.04 7.33 -- -- -- -- -- 0.0827 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 101.04 precipitation 0.1 270 < th dose independent rect. 1 5
2 101.04 precipitation 0.1 270 < th dose dependent rect. 1 5
3 101.05 temperature 25.0 270 < th dose independent rect. 2 3
4 101.32 wind 5.0 270 < th dose independent rect. 1 5
7 102.94 temperature 10.0 270 > th dose independent rect. 1 5
9 102.94 temperature 30.0 270 < th dose independent rect. 1 5
10 102.94 humidity 50.0 270 > th dose independent rect. 1 5
13 102.94 atmosphere 995.0 270 > th dose independent rect. 1 5
14 102.94 atmosphere 1015.0 270 < th dose independent rect. 1 5
15 102.94 radiation 20.0 270 < th dose independent rect. 1 5
18 102.94 temperature 10.0 270 > th dose independent rect. 6 19
19 102.99 wind 9.0 270 < th dose independent rect. 6 19
21 103.31 precipitation 0.1 270 < th dose independent rect. 2 3
22 103.31 precipitation 0.1 270 < th dose dependent rect. 2 3
23 103.41 radiation 40.0 270 < th dose dependent rect. 1 5
25 103.59 precipitation 0.1 270 < th dose independent rect. 6 19
26 103.59 precipitation 0.1 270 < th dose dependent rect. 6 19
28 103.79 wind 9.0 270 < th dose dependent rect. 1 5
29 103.81 wind 5.0 270 < th dose independent rect. 2 3
33 104.45 temperature 30.0 270 < th dose dependent rect. 2 3
39 105.31 wind 9.0 270 < th dose dependent rect. 2 3
42 105.42 temperature 10.0 270 > th dose independent rect. 2 3
45 105.42 humidity 50.0 270 > th dose independent rect. 2 3
48 105.42 atmosphere 995.0 270 > th dose independent rect. 2 3
49 105.42 atmosphere 1010.0 270 < th dose independent rect. 2 3
51 105.42 radiation 20.0 270 < th dose independent rect. 2 3
55 105.42 temperature 10.0 270 > th dose independent rect. 5 21
57 105.48 wind 9.0 270 < th dose independent rect. 5 21
58 105.48 radiation 40.0 270 < th dose dependent rect. 2 3
62 105.64 radiation 1.0 270 < th dose independent rect. 2 3
98 107.09 precipitation 0.1 270 < th dose independent rect. 5 21
99 107.09 precipitation 0.1 270 < th dose dependent rect. 5 21
145 108.25 humidity 50.0 270 > th dose dependent rect. 1 5
153 108.49 wind 1.0 270 > th dose independent rect. 1 5
154 108.49 radiation 1.0 270 < th dose dependent rect. 1 17
173 108.72 radiation 30.0 270 < th dose independent rect. 15 15
176 108.81 atmosphere 995.0 270 > th dose dependent rect. 1 5
188 109.20 humidity 50.0 270 > th dose dependent rect. 2 3
192 109.22 radiation 1.0 270 < th dose independent rect. 1 17
217 109.51 wind 1.0 270 > th dose independent rect. 2 2
242 109.91 atmosphere 995.0 270 > th dose independent rect. 6 19
243 109.95 temperature 15.0 270 > th dose independent rect. 1 18
246 110.03 precipitation 0.1 270 < th dose independent rect. 1 18
247 110.03 precipitation 0.1 270 < th dose dependent rect. 1 18
264 110.31 precipitation 0.1 270 < th dose independent rect. 15 15
265 110.31 precipitation 0.1 270 < th dose dependent rect. 15 15
268 110.35 radiation 40.0 270 < th dose dependent rect. 15 15
283 110.54 atmosphere 995.0 270 > th dose dependent rect. 2 3
287 110.56 temperature 10.0 270 > th dose independent rect. 6 9
288 110.56 atmosphere 1015.0 270 < th dose independent rect. 6 9
289 110.56 temperature 10.0 270 > th dose independent rect. 15 15
302 110.75 precipitation 0.1 270 < th dose independent rect. 6 9
304 110.75 precipitation 0.1 270 < th dose dependent rect. 6 9
307 110.83 precipitation 0.1 10 < th dose independent rect. 2 6
308 110.83 precipitation 0.1 10 < th dose dependent rect. 2 6
319 110.94 atmosphere 1015.0 270 < th dose independent rect. 6 19
332 111.20 humidity 50.0 270 > th dose dependent rect. 19 6
335 111.30 wind 9.0 10 < th dose dependent rect. 2 6
336 111.32 wind 9.0 270 < th dose independent rect. 6 9
339 111.34 wind 9.0 270 < th dose independent rect. 19 6
340 111.34 temperature 10.0 270 > th dose independent rect. 19 6
341 111.34 temperature 30.0 270 < th dose independent rect. 19 6
342 111.34 humidity 50.0 270 > th dose independent rect. 19 6
344 111.34 atmosphere 995.0 270 > th dose independent rect. 19 6
345 111.34 radiation 1.0 270 < th dose independent rect. 19 6
351 111.34 atmosphere 1015.0 270 < th dose independent rect. 1 18
352 111.34 radiation 1.0 270 < th dose dependent rect. 19 6
358 111.36 atmosphere 995.0 270 > th dose independent rect. 6 9
362 111.37 wind 9.0 270 < th dose independent rect. 15 15
386 111.65 wind 5.0 10 < th dose independent rect. 2 6
395 111.78 atmosphere 995.0 270 > th dose independent rect. 1 18
411 111.90 precipitation 0.1 270 < th dose independent rect. 19 6
412 111.90 precipitation 0.1 270 < th dose dependent rect. 19 6
414 111.94 wind 9.0 270 < th dose independent rect. 1 18
434 112.00 humidity 50.0 270 > th dose independent rect. 6 9
449 112.18 atmosphere 995.0 270 > th dose independent rect. 15 15
451 112.20 temperature 10.0 270 > th dose dependent rect. 19 6
479 112.50 wind 1.0 270 > th dose independent rect. 6 19
502 112.59 precipitation 0.1 10 < th dose independent rect. 8 18
503 112.59 precipitation 0.1 10 < th dose dependent rect. 8 18
553 113.01 radiation 30.0 10 < th dose independent rect. 2 6
571 113.21 humidity 70.0 10 > th dose independent rect. 2 6
577 113.26 temperature 10.0 10 > th dose independent rect. 2 6
579 113.26 temperature 30.0 10 < th dose independent rect. 2 6
580 113.26 humidity 50.0 10 > th dose independent rect. 2 6
582 113.26 atmosphere 995.0 10 > th dose independent rect. 2 6
583 113.26 atmosphere 1015.0 10 < th dose independent rect. 2 6
584 113.26 temperature 10.0 10 > th dose independent rect. 8 18
592 113.39 radiation 1.0 270 < th dose dependent sin 3 NA
631 113.73 wind 9.0 10 < th dose independent rect. 8 18
670 114.11 temperature 10.0 270 > th dose dependent rect. 1 5
706 114.37 wind 9.0 270 < th dose dependent rect. 19 6
741 114.48 wind 9.0 270 < th dose dependent rect. 6 19
792 114.81 temperature 30.0 10 < th dose dependent rect. 4 3
793 114.82 temperature 10.0 270 > th dose dependent rect. 2 3
795 114.86 wind 9.0 1440 < th dose independent rect. 3 6
796 114.86 temperature 10.0 1440 > th dose independent rect. 3 6
799 114.86 humidity 50.0 1440 > th dose independent rect. 3 6
801 114.86 atmosphere 995.0 1440 > th dose independent rect. 3 6
802 114.86 temperature 10.0 1440 > th dose independent rect. 9 18
889 115.28 temperature 10.0 270 > th dose dependent rect. 21 3
891 115.29 wind 9.0 90 < th dose independent rect. 3 18
970 115.73 atmosphere 995.0 10 > th dose dependent rect. 2 6