Os07g0228600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0228600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.91 | 0.322 | 9.55 | -0.758 | 0.25 | 0.724 | 0.187 | -0.313 | 0.065 | 20.5 | 29.2 | 259 | -- | -- |
| 46.74 | 0.318 | 9.55 | -0.769 | 0.292 | 0.713 | 0.186 | -- | 0.0927 | 20.5 | 28.88 | 368 | -- | -- |
| 47.02 | 0.319 | 9.55 | -0.758 | 0.25 | 0.724 | -- | -0.313 | 0.065 | 20 | 29.2 | 259 | -- | -- |
| 46.79 | 0.319 | 9.54 | -0.782 | 0.324 | 0.762 | -- | -- | 0.0947 | 20 | 28.9 | 371 | -- | -- |
| 49.94 | 0.329 | 9.55 | -0.765 | -- | 0.635 | -- | -0.458 | 0.0559 | -- | 29.19 | 232 | -- | -- |
| 60.33 | 0.364 | 9.56 | -0.903 | 0.285 | -- | 0.501 | -- | 0.0144 | 1.91 | -- | -- | -- | -- |
| 61.27 | 0.367 | 9.56 | -0.918 | 0.284 | -- | -- | -- | 0.0119 | 1.61 | -- | -- | -- | -- |
| 50.07 | 0.33 | 9.55 | -0.813 | -- | 0.602 | -- | -- | 0.0516 | -- | 29.1 | 232 | -- | -- |
| 62.46 | 0.368 | 9.54 | -- | 0.443 | 0.88 | -- | -- | 0.176 | 19.7 | 28.7 | 407 | -- | -- |
| 66.21 | 0.38 | 9.55 | -0.906 | -- | -- | -- | -- | 0.0181 | -- | -- | -- | -- | -- |
| 83.47 | 0.427 | 9.53 | -- | 0.268 | -- | -- | -- | 0.114 | 1.5 | -- | -- | -- | -- |
| 67.35 | 0.382 | 9.53 | -- | -- | 0.671 | -- | -- | 0.147 | -- | 29.2 | 237 | -- | -- |
| 87.88 | 0.438 | 9.53 | -- | -- | -- | -- | -- | 0.119 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.79 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 5 | 44.53 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 10 | 44.71 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 14 | 44.95 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 30 | 45.21 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 32 | 45.28 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 118 | 46.12 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 8 |
| 146 | 46.45 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 3 |
| 157 | 46.52 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 14 |
| 209 | 46.88 | temperature | 20 | 270 | > th | dose dependent | sin | 1 | NA |
| 210 | 46.88 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 328 | 47.66 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 23 |
| 458 | 48.13 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 9 |
| 481 | 48.22 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 12 |
| 486 | 48.25 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 1 |
| 539 | 48.46 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 18 |
| 551 | 48.50 | humidity | 60 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 557 | 48.53 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 576 | 48.59 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 577 | 48.59 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 15 |
| 582 | 48.60 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 583 | 48.60 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 13 |
| 585 | 48.61 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 7 |
| 586 | 48.61 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 11 |
| 592 | 48.62 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 5 |
| 594 | 48.62 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 9 |
| 611 | 48.64 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 21 |
| 624 | 48.67 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 12 |
| 629 | 48.68 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 635 | 48.69 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 637 | 48.70 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 638 | 48.71 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 646 | 48.72 | temperature | 25 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 666 | 48.75 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 18 |
| 679 | 48.76 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 18 |
| 689 | 48.78 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 691 | 48.78 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 14 |
| 696 | 48.79 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 3 |
| 714 | 48.81 | temperature | 25 | 30 | > th | dose dependent | rect. | 12 | 23 |
| 717 | 48.82 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 5 |
| 729 | 48.83 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 18 |
| 732 | 48.83 | temperature | 25 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 733 | 48.84 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 3 |
| 749 | 48.86 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 9 |
| 883 | 48.98 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 886 | 48.99 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 4 |
| 938 | 49.11 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 6 |
| 990 | 49.20 | temperature | 30 | 14400 | > th | dose independent | sin | 12 | NA |
| 998 | 49.21 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 21 |
| 999 | 49.21 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 2 |