Os07g0227800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0227800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66.67 | 0.384 | 12.7 | -0.536 | 1.2 | -0.784 | 0.293 | 0.673 | -0.651 | 10.8 | 7.807 | 1462 | -- | -- |
| 66.93 | 0.381 | 12.7 | -0.489 | 1.2 | -0.896 | 0.245 | -- | -0.646 | 10.7 | 6.331 | 1483 | -- | -- |
| 66.69 | 0.38 | 12.7 | -0.569 | 1.15 | -0.822 | -- | 0.639 | -0.654 | 10.7 | 6.646 | 1483 | -- | -- |
| 66.77 | 0.381 | 12.7 | -0.437 | 1.11 | -0.925 | -- | -- | -0.645 | 10.5 | 6.41 | 1528 | -- | -- |
| 87.82 | 0.439 | 12.7 | -0.4 | -- | -0.951 | -- | 0.137 | -0.512 | -- | 6.646 | 1483 | -- | -- |
| 81.18 | 0.422 | 12.6 | -0.407 | 1.26 | -- | 0.0981 | -- | -0.483 | 10.8 | -- | -- | -- | -- |
| 81.22 | 0.422 | 12.6 | -0.403 | 1.26 | -- | -- | -- | -0.482 | 10.8 | -- | -- | -- | -- |
| 87.92 | 0.439 | 12.7 | -0.404 | -- | -0.949 | -- | -- | -0.515 | -- | 6.41 | 1528 | -- | -- |
| 72 | 0.395 | 12.6 | -- | 1.11 | -0.819 | -- | -- | -0.576 | 10.6 | 8.831 | 1531 | -- | -- |
| 178.89 | 0.625 | 12.6 | -0.428 | -- | -- | -- | -- | -0.49 | -- | -- | -- | -- | -- |
| 85.49 | 0.433 | 12.6 | -- | 1.26 | -- | -- | -- | -0.437 | 10.8 | -- | -- | -- | -- |
| 92.22 | 0.449 | 12.6 | -- | -- | -0.952 | -- | -- | -0.47 | -- | 6.41 | 1528 | -- | -- |
| 183.72 | 0.633 | 12.6 | -- | -- | -- | -- | -- | -0.442 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.14 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 3 | 66.09 | humidity | 70 | 1440 | < th | dose independent | rect. | 16 | 2 |
| 4 | 66.23 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 6 | 66.52 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 8 | 66.66 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 10 | 66.67 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 10 |
| 11 | 66.67 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 12 |
| 12 | 66.67 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 17 | 66.71 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 22 |
| 21 | 66.73 | radiation | 10 | 1440 | > th | dose independent | rect. | 16 | 21 |
| 31 | 66.86 | radiation | 10 | 1440 | < th | dose dependent | sin | 22 | NA |
| 45 | 66.98 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 51 | 67.03 | humidity | 70 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 53 | 67.04 | humidity | 70 | 1440 | > th | dose independent | rect. | 4 | 15 |
| 60 | 67.05 | humidity | 70 | 1440 | > th | dose independent | rect. | 23 | 20 |
| 76 | 67.13 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 81 | 67.19 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 17 |
| 84 | 67.21 | humidity | 70 | 1440 | > th | dose independent | rect. | 14 | 20 |
| 91 | 67.25 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 95 | 67.26 | humidity | 70 | 1440 | > th | dose independent | sin | 19 | NA |
| 109 | 67.30 | humidity | 70 | 1440 | > th | dose independent | rect. | 7 | 17 |
| 128 | 67.31 | humidity | 70 | 1440 | > th | dose independent | rect. | 7 | 22 |
| 161 | 67.33 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 207 | 67.36 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 7 |
| 261 | 67.52 | radiation | 10 | 1440 | > th | dose independent | sin | 4 | NA |
| 268 | 67.54 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 13 |
| 278 | 67.56 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 17 |
| 303 | 67.63 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 351 | 67.69 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 361 | 67.72 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 369 | 67.74 | humidity | 70 | 1440 | < th | dose independent | rect. | 16 | 22 |
| 385 | 67.82 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 12 |
| 400 | 67.83 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 471 | 67.83 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 23 |
| 482 | 67.87 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 484 | 67.87 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 529 | 67.92 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 551 | 67.93 | radiation | 10 | 1440 | < th | dose dependent | rect. | 23 | 21 |
| 556 | 67.93 | radiation | 10 | 1440 | < th | dose dependent | rect. | 21 | 23 |
| 559 | 67.94 | radiation | 10 | 1440 | < th | dose dependent | no | NA | NA |
| 572 | 67.94 | radiation | 10 | 1440 | < th | dose dependent | rect. | 19 | 23 |
| 595 | 67.98 | humidity | 50 | 720 | > th | dose dependent | rect. | 7 | 20 |
| 627 | 68.05 | humidity | 60 | 1440 | > th | dose dependent | rect. | 7 | 12 |
| 649 | 68.09 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 680 | 68.13 | humidity | 70 | 1440 | < th | dose independent | sin | 20 | NA |
| 733 | 68.18 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 19 |
| 734 | 68.19 | humidity | 70 | 1440 | < th | dose independent | no | NA | NA |
| 818 | 68.24 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 820 | 68.25 | humidity | 70 | 1440 | < th | dose independent | rect. | 14 | 20 |
| 822 | 68.25 | radiation | 10 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 893 | 68.39 | humidity | 60 | 1440 | > th | dose dependent | sin | 23 | NA |
| 930 | 68.42 | humidity | 90 | 1440 | < th | dose dependent | rect. | 7 | 13 |