Os07g0227600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pathogenesis-related transcriptional factor and ERF domain containing protein.
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Os07g0227600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pathogenesis-related transcriptional factor and ERF domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 108.7 | 0.49 | 9.16 | 0.0521 | 0.485 | -1.76 | 1.47 | 1.29 | -0.0228 | 7.18 | 21.53 | 2189 | -- | -- |
| 112.8 | 0.495 | 9.19 | -0.193 | 0.468 | -1.82 | 1.32 | -- | -0.0879 | 7.12 | 21.6 | 2196 | -- | -- |
| 114.2 | 0.498 | 9.15 | 0.08 | 0.5 | -1.69 | -- | 1.36 | 0.0215 | 7.66 | 21.9 | 2277 | -- | -- |
| 116.05 | 0.502 | 9.2 | -0.219 | 0.498 | -1.9 | -- | -- | -0.11 | 7.98 | 21.3 | 2128 | -- | -- |
| 127.27 | 0.525 | 9.17 | 0.0229 | -- | -1.72 | -- | 1.24 | 0.0122 | -- | 21.99 | 2176 | -- | -- |
| 210.8 | 0.681 | 9.33 | -1.18 | 0.59 | -- | 1.27 | -- | -0.674 | 7.78 | -- | -- | -- | -- |
| 214.58 | 0.686 | 9.33 | -1.14 | 0.593 | -- | -- | -- | -0.673 | 8.55 | -- | -- | -- | -- |
| 128.82 | 0.529 | 9.22 | -0.218 | -- | -1.95 | -- | -- | -0.0965 | -- | 21.32 | 2129 | -- | -- |
| 117.35 | 0.505 | 9.2 | -- | 0.48 | -1.99 | -- | -- | -0.0685 | 8.01 | 21.35 | 2129 | -- | -- |
| 234.28 | 0.715 | 9.35 | -1.14 | -- | -- | -- | -- | -0.667 | -- | -- | -- | -- | -- |
| 248.79 | 0.738 | 9.3 | -- | 0.589 | -- | -- | -- | -0.546 | 8.7 | -- | -- | -- | -- |
| 129.84 | 0.531 | 9.21 | -- | -- | -2.04 | -- | -- | -0.0522 | -- | 21.39 | 2162 | -- | -- |
| 268.39 | 0.765 | 9.32 | -- | -- | -- | -- | -- | -0.541 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 104.81 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 8 |
| 4 | 105.08 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 8 |
| 9 | 105.21 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 13 | 105.32 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 12 |
| 31 | 105.71 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 12 |
| 36 | 105.79 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 37 | 105.79 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 164 | 106.61 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 19 |
| 212 | 107.00 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 243 | 107.29 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 514 | 110.27 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 558 | 110.84 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 755 | 112.58 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 758 | 112.60 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 759 | 112.60 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 793 | 112.88 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 796 | 112.89 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 807 | 112.94 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 812 | 112.98 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 816 | 113.00 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 901 | 113.58 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 903 | 113.60 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 918 | 113.68 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 920 | 113.71 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 5 |
| 940 | 113.83 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |