Os07g0227200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0227200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 69.8 | 0.393 | 9.18 | -1.72 | 0.651 | -1.71 | -0.609 | -1.96 | -0.0949 | 11 | 23.1 | 49 | -- | -- |
| 74.02 | 0.404 | 9.22 | -1.94 | 0.658 | -1.36 | -0.129 | -- | -0.157 | 10.8 | 23.9 | 10 | -- | -- |
| 70.8 | 0.395 | 9.19 | -1.78 | 0.643 | -1.64 | -- | -1.49 | -0.108 | 10.7 | 23.1 | 50 | -- | -- |
| 74.06 | 0.403 | 9.22 | -1.95 | 0.659 | -1.37 | -- | -- | -0.155 | 10.8 | 23.79 | 10 | -- | -- |
| 94.09 | 0.454 | 9.22 | -1.83 | -- | -2.06 | -- | -1.84 | -0.156 | -- | 23.12 | 39 | -- | -- |
| 99.68 | 0.468 | 9.17 | -1.64 | 0.859 | -- | -0.216 | -- | 0.0575 | 11.4 | -- | -- | -- | -- |
| 99.87 | 0.468 | 9.17 | -1.65 | 0.861 | -- | -- | -- | 0.0564 | 11.3 | -- | -- | -- | -- |
| 97.71 | 0.462 | 9.26 | -2.04 | -- | -1.65 | -- | -- | -0.277 | -- | 25.2 | 10 | -- | -- |
| 165.22 | 0.602 | 9.14 | -- | 0.785 | -0.669 | -- | -- | 0.166 | 11.3 | 23.1 | 10 | -- | -- |
| 146.25 | 0.565 | 9.19 | -1.67 | -- | -- | -- | -- | 0.0481 | -- | -- | -- | -- | -- |
| 171.3 | 0.612 | 9.13 | -- | 0.878 | -- | -- | -- | 0.24 | 11.4 | -- | -- | -- | -- |
| 199.05 | 0.659 | 9.19 | -- | -- | -0.999 | -- | -- | 0.0456 | -- | 26.5 | 7 | -- | -- |
| 219.64 | 0.692 | 9.15 | -- | -- | -- | -- | -- | 0.233 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.93 | temperature | 25 | 90 | < th | dose dependent | rect. | 14 | 16 |
| 31 | 67.53 | temperature | 10 | 90 | > th | dose dependent | sin | 10 | NA |
| 60 | 68.15 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 12 |
| 112 | 69.08 | temperature | 30 | 90 | < th | dose dependent | sin | 10 | NA |
| 352 | 71.86 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 8 |
| 371 | 72.02 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 3 |
| 372 | 72.02 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 374 | 72.03 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 377 | 72.06 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 381 | 72.06 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 386 | 72.10 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 391 | 72.12 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 396 | 72.15 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 398 | 72.16 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 401 | 72.19 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 408 | 72.21 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 7 |
| 412 | 72.22 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 449 | 72.60 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 7 |
| 459 | 72.64 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 5 |
| 471 | 72.73 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 472 | 72.74 | temperature | 25 | 720 | < th | dose dependent | sin | 18 | NA |
| 506 | 72.96 | temperature | 20 | 10 | > th | dose independent | sin | 8 | NA |
| 609 | 73.73 | temperature | 20 | 10 | < th | dose independent | rect. | 16 | 15 |
| 710 | 74.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 732 | 74.61 | temperature | 20 | 90 | < th | dose independent | rect. | 12 | 18 |
| 755 | 74.73 | temperature | 20 | 10 | < th | dose independent | sin | 9 | NA |
| 813 | 75.06 | temperature | 20 | 90 | > th | dose independent | rect. | 21 | 12 |
| 838 | 75.17 | temperature | 20 | 10 | < th | dose independent | rect. | 12 | 19 |
| 907 | 75.46 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 13 |