Os07g0225300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : OsNAC3 protein.
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Os07g0225300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : OsNAC3 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 179.8 | 0.63 | 10.9 | -0.643 | 1.11 | -1.12 | -1.13 | 0.992 | -0.274 | 20 | 27.84 | 30 | -- | -- |
| 183.04 | 0.63 | 10.9 | -0.618 | 1.09 | -0.989 | -0.722 | -- | -0.275 | 19.5 | 27.68 | 30 | -- | -- |
| 182.47 | 0.629 | 10.9 | -0.634 | 1.12 | -1.14 | -- | 0.514 | -0.285 | 20.1 | 27.18 | 30 | -- | -- |
| 183.53 | 0.631 | 10.9 | -0.64 | 1.11 | -1.1 | -- | -- | -0.272 | 20 | 26.83 | 30 | -- | -- |
| 201.36 | 0.661 | 10.9 | -0.739 | -- | -1.15 | -- | 0.574 | -0.307 | -- | 3.91 | 559 | -- | -- |
| 202.31 | 0.667 | 10.9 | -0.595 | 1.11 | -- | -0.832 | -- | -0.202 | 16.5 | -- | -- | -- | -- |
| 204.17 | 0.669 | 10.9 | -0.601 | 1.11 | -- | -- | -- | -0.206 | 16.4 | -- | -- | -- | -- |
| 202.93 | 0.663 | 10.9 | -0.655 | -- | -1.17 | -- | -- | -0.271 | -- | 3.932 | 559 | -- | -- |
| 194.3 | 0.649 | 10.9 | -- | 1.11 | -1.09 | -- | -- | -0.203 | 20 | 27.23 | 30 | -- | -- |
| 269.62 | 0.767 | 10.9 | -0.645 | -- | -- | -- | -- | -0.235 | -- | -- | -- | -- | -- |
| 213.7 | 0.684 | 10.9 | -- | 1.12 | -- | -- | -- | -0.139 | 16.4 | -- | -- | -- | -- |
| 213.9 | 0.681 | 10.9 | -- | -- | -1.18 | -- | -- | -0.206 | -- | 9.62 | 537 | -- | -- |
| 280.58 | 0.782 | 10.9 | -- | -- | -- | -- | -- | -0.164 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 179.78 | radiation | 20 | 10 | < th | dose independent | rect. | 4 | 10 |
| 3 | 179.97 | radiation | 20 | 10 | < th | dose independent | rect. | 4 | 18 |
| 4 | 179.98 | radiation | 10 | 10 | > th | dose independent | rect. | 9 | 23 |
| 5 | 180.09 | radiation | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 6 | 180.12 | radiation | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 7 | 180.15 | radiation | 30 | 30 | < th | dose dependent | no | NA | NA |
| 8 | 180.37 | radiation | 30 | 10 | < th | dose dependent | rect. | 4 | 18 |
| 10 | 180.56 | radiation | 30 | 10 | < th | dose dependent | rect. | 4 | 10 |
| 13 | 180.66 | radiation | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 25 | 180.99 | radiation | 20 | 10 | < th | dose independent | rect. | 16 | 22 |
| 40 | 181.56 | humidity | 90 | 30 | < th | dose dependent | rect. | 7 | 10 |
| 44 | 181.69 | humidity | 90 | 30 | < th | dose dependent | rect. | 4 | 13 |
| 45 | 181.70 | humidity | 60 | 10 | > th | dose dependent | rect. | 4 | 10 |
| 52 | 181.79 | radiation | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 68 | 182.13 | humidity | 50 | 10 | > th | dose dependent | rect. | 4 | 18 |
| 71 | 182.15 | radiation | 30 | 30 | < th | dose dependent | sin | 0 | NA |
| 73 | 182.21 | radiation | 20 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 78 | 182.28 | radiation | 20 | 30 | < th | dose independent | rect. | 8 | 14 |
| 102 | 182.56 | humidity | 90 | 30 | < th | dose dependent | rect. | 22 | 19 |
| 111 | 182.68 | radiation | 20 | 10 | < th | dose dependent | rect. | 16 | 19 |
| 115 | 182.72 | humidity | 70 | 10 | > th | dose dependent | rect. | 4 | 14 |
| 116 | 182.77 | radiation | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 123 | 182.92 | radiation | 20 | 10 | < th | dose independent | rect. | 3 | 23 |
| 134 | 183.01 | radiation | 20 | 10 | < th | dose independent | no | NA | NA |
| 148 | 183.16 | radiation | 20 | 10 | < th | dose independent | rect. | 11 | 23 |
| 155 | 183.21 | humidity | 70 | 10 | > th | dose independent | rect. | 4 | 11 |
| 166 | 183.30 | radiation | 20 | 10 | < th | dose independent | rect. | 13 | 23 |
| 168 | 183.31 | humidity | 50 | 10 | > th | dose dependent | sin | 2 | NA |
| 195 | 183.54 | radiation | 20 | 10 | < th | dose independent | sin | 2 | NA |
| 205 | 183.64 | radiation | 30 | 30 | < th | dose dependent | rect. | 8 | 14 |
| 247 | 183.94 | radiation | 20 | 10 | < th | dose independent | rect. | 23 | 23 |
| 248 | 183.94 | radiation | 1 | 30 | > th | dose dependent | rect. | 9 | 23 |
| 292 | 184.19 | humidity | 90 | 10 | < th | dose dependent | sin | 2 | NA |
| 328 | 184.39 | radiation | 20 | 10 | < th | dose independent | rect. | 8 | 23 |
| 358 | 184.49 | wind | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 367 | 184.55 | radiation | 20 | 10 | > th | dose independent | no | NA | NA |
| 368 | 184.55 | radiation | 20 | 10 | > th | dose independent | rect. | 7 | 10 |
| 488 | 184.62 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 1 |
| 515 | 184.74 | radiation | 20 | 10 | > th | dose independent | rect. | 11 | 23 |
| 521 | 184.78 | radiation | 20 | 10 | > th | dose independent | rect. | 13 | 23 |
| 522 | 184.78 | humidity | 90 | 30 | < th | dose dependent | rect. | 9 | 8 |
| 555 | 184.85 | radiation | 20 | 10 | > th | dose independent | rect. | 15 | 23 |
| 561 | 184.87 | wind | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 568 | 184.88 | humidity | 70 | 10 | > th | dose dependent | rect. | 4 | 8 |
| 757 | 185.19 | radiation | 1 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 776 | 185.28 | radiation | 1 | 30 | > th | dose dependent | rect. | 7 | 23 |
| 785 | 185.31 | radiation | 20 | 10 | > th | dose independent | sin | 3 | NA |
| 799 | 185.36 | humidity | 70 | 10 | > th | dose independent | rect. | 4 | 18 |
| 829 | 185.46 | radiation | 1 | 30 | > th | dose dependent | rect. | 7 | 10 |
| 850 | 185.49 | humidity | 70 | 43200 | > th | dose dependent | rect. | 1 | 13 |
| 855 | 185.50 | radiation | 1 | 30 | > th | dose dependent | rect. | 18 | 23 |
| 859 | 185.51 | radiation | 1 | 30 | > th | dose dependent | rect. | 5 | 12 |
| 872 | 185.52 | radiation | 1 | 30 | > th | dose dependent | no | NA | NA |
| 967 | 185.60 | temperature | 20 | 720 | > th | dose independent | rect. | 2 | 4 |