Os07g0225000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0225000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.87 | 0.315 | 16.8 | -0.475 | 1.86 | 1.01 | 0.765 | 0.0362 | -0.713 | 19.8 | 9.92 | 3972 | -- | -- |
| 44.87 | 0.312 | 16.8 | -0.48 | 1.86 | 1 | 0.769 | -- | -0.714 | 19.8 | 9.926 | 3961 | -- | -- |
| 46.55 | 0.318 | 16.8 | -0.494 | 1.86 | 1.01 | -- | 0.039 | -0.713 | 19.8 | 10.13 | 3960 | -- | -- |
| 46.56 | 0.318 | 16.8 | -0.506 | 1.86 | 1.01 | -- | -- | -0.715 | 19.8 | 10.12 | 3960 | -- | -- |
| 155.87 | 0.581 | 16.8 | -0.561 | -- | 2.54 | -- | 0.62 | -0.889 | -- | 12.79 | 580 | -- | -- |
| 62.85 | 0.372 | 16.7 | -0.0341 | 1.88 | -- | 0.793 | -- | -0.519 | 20 | -- | -- | -- | -- |
| 64.71 | 0.377 | 16.7 | -0.0558 | 1.88 | -- | -- | -- | -0.519 | 20 | -- | -- | -- | -- |
| 154.22 | 0.578 | 16.8 | -0.77 | -- | 2.23 | -- | -- | -0.921 | -- | 18.01 | 598 | -- | -- |
| 50.5 | 0.331 | 16.8 | -- | 1.85 | 0.864 | -- | -- | -0.638 | 20 | 10.32 | 1700 | -- | -- |
| 256.75 | 0.749 | 16.7 | -0.0748 | -- | -- | -- | -- | -0.543 | -- | -- | -- | -- | -- |
| 64.79 | 0.377 | 16.7 | -- | 1.88 | -- | -- | -- | -0.512 | 20 | -- | -- | -- | -- |
| 151.88 | 0.574 | 16.7 | -- | -- | 1.88 | -- | -- | -0.687 | -- | 24.17 | 594 | -- | -- |
| 256.9 | 0.748 | 16.7 | -- | -- | -- | -- | -- | -0.535 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.09 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 11 |
| 11 | 45.15 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 11 |
| 21 | 45.19 | temperature | 30 | 4320 | < th | dose dependent | rect. | 14 | 13 |
| 23 | 45.19 | temperature | 10 | 4320 | > th | dose dependent | rect. | 11 | 17 |
| 29 | 45.21 | temperature | 15 | 1440 | > th | dose dependent | sin | 8 | NA |
| 44 | 45.22 | temperature | 10 | 4320 | > th | dose dependent | rect. | 13 | 15 |
| 51 | 45.23 | temperature | 10 | 4320 | > th | dose dependent | rect. | 14 | 13 |
| 60 | 45.24 | temperature | 30 | 1440 | < th | dose dependent | sin | 7 | NA |
| 81 | 45.26 | temperature | 10 | 4320 | > th | dose dependent | sin | 16 | NA |
| 82 | 45.26 | temperature | 30 | 4320 | < th | dose dependent | sin | 16 | NA |
| 105 | 45.27 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 20 |
| 335 | 45.39 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 2 |
| 365 | 45.40 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 4 |
| 383 | 45.40 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 18 |
| 396 | 45.40 | temperature | 10 | 4320 | > th | dose dependent | rect. | 14 | 22 |
| 403 | 45.40 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 23 |
| 405 | 45.41 | temperature | 10 | 4320 | > th | dose dependent | no | NA | NA |
| 407 | 45.41 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 2 |
| 434 | 45.41 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 23 |
| 513 | 45.43 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 23 |
| 597 | 45.45 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 21 |
| 741 | 45.49 | temperature | 30 | 4320 | < th | dose dependent | no | NA | NA |
| 774 | 45.50 | temperature | 25 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 848 | 45.51 | temperature | 30 | 4320 | < th | dose dependent | rect. | 3 | 23 |