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Os07g0224000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ribosomal protein L24E family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.5 (0.0259) R2 : 0.277
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.88 (0.0667) R2dC : 0.276 R2C : 0.277
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0246 (0.0546) R2dN8 : 0.000415 R2N8 : 0.000491
σ : 0.489
deviance : 109.4
__
_____
C
peak time of C : 16.3
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
92.93 0.453 12.6 -0.301 0.895 0.144 0.728 -2.14 -0.216 16.4 20.2 4334 -- --
96.63 0.458 12.5 -0.13 0.911 0.674 1.04 -- -0.145 16.5 17 15335 -- --
93.97 0.451 12.6 -0.236 0.9 0.185 -- -2 -0.218 16.3 20 2860 -- --
98.18 0.461 12.5 -0.18 0.881 0.776 -- -- -0.154 16.3 16.8 15350 -- --
137.91 0.547 12.6 -0.306 -- 0.144 -- -2.09 -0.208 -- 20.2 4381 -- --
103.9 0.478 12.5 0.365 0.883 -- 0.832 -- 0.0124 16.4 -- -- -- --
105.75 0.482 12.5 0.372 0.887 -- -- -- 0.0169 16.3 -- -- -- --
140.57 0.552 12.5 -0.176 -- 0.738 -- -- -0.158 -- 16.4 14846 -- --
98.54 0.462 12.5 -- 0.887 0.65 -- -- -0.106 16.3 16.39 14617 -- --
148.15 0.569 12.5 0.337 -- -- -- -- -0.00668 -- -- -- -- --
109.4 0.489 12.5 -- 0.88 -- -- -- -0.0246 16.3 -- -- -- --
140.9 0.553 12.5 -- -- 0.649 -- -- -0.117 -- 15.29 13361 -- --
151.15 0.574 12.5 -- -- -- -- -- -0.044 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 84.38 temperature 15.0 270 > th dose dependent rect. 9 1
4 85.33 temperature 15.0 90 > th dose dependent rect. 8 6
7 85.78 temperature 15.0 10 > th dose dependent rect. 9 5
17 86.37 temperature 10.0 43200 > th dose independent rect. 10 6
26 86.77 temperature 10.0 10 > th dose dependent rect. 9 17
32 87.04 temperature 10.0 90 > th dose dependent rect. 8 18
37 87.24 temperature 15.0 270 > th dose dependent rect. 6 6
59 87.90 radiation 1.0 270 > th dose dependent rect. 9 1
71 88.38 temperature 10.0 10 > th dose dependent rect. 9 15
76 88.50 wind 3.0 4320 > th dose independent rect. 8 1
79 88.54 humidity 50.0 90 > th dose independent rect. 8 6
82 88.59 wind 3.0 4320 < th dose independent rect. 8 1
87 88.77 humidity 50.0 10 > th dose independent rect. 9 5
91 88.80 temperature 10.0 270 > th dose dependent rect. 19 17
96 88.90 radiation 40.0 10 < th dose independent rect. 12 21
112 89.11 radiation 40.0 90 < th dose independent rect. 3 16
116 89.13 precipitation 0.1 90 < th dose independent rect. 8 6
117 89.13 precipitation 0.1 90 < th dose dependent rect. 8 6
132 89.30 humidity 90.0 270 < th dose independent rect. 9 1
133 89.32 humidity 50.0 270 > th dose independent rect. 9 1
134 89.32 temperature 15.0 90 > th dose independent rect. 14 18
137 89.39 temperature 10.0 90 > th dose independent rect. 8 6
138 89.39 atmosphere 995.0 90 > th dose independent rect. 8 6
139 89.39 atmosphere 1015.0 90 < th dose independent rect. 8 6
141 89.39 temperature 15.0 10 > th dose independent rect. 14 19
142 89.39 radiation 40.0 90 < th dose independent rect. 13 19
143 89.40 radiation 1.0 10 > th dose independent rect. 9 5
146 89.44 wind 1.0 30 > th dose independent rect. 9 5
147 89.45 radiation 20.0 270 > th dose independent rect. 9 1
149 89.46 wind 9.0 90 < th dose independent rect. 14 18
150 89.47 temperature 10.0 10 > th dose independent rect. 9 5
152 89.47 atmosphere 995.0 10 > th dose independent rect. 9 5
153 89.47 atmosphere 1015.0 10 < th dose independent rect. 9 5
154 89.47 precipitation 0.1 10 < th dose independent rect. 9 5
156 89.47 precipitation 0.1 10 < th dose dependent rect. 9 5
159 89.49 wind 9.0 90 < th dose independent rect. 8 6
161 89.50 temperature 10.0 10 > th dose dependent rect. 20 18
166 89.55 precipitation 0.1 270 < th dose independent rect. 9 1
167 89.55 precipitation 0.1 270 < th dose dependent rect. 9 1
172 89.59 temperature 10.0 270 > th dose independent rect. 9 1
173 89.59 atmosphere 995.0 270 > th dose independent rect. 9 1
174 89.59 atmosphere 1015.0 270 < th dose independent rect. 9 1
175 89.59 radiation 1.0 90 > th dose independent rect. 8 6
177 89.59 temperature 10.0 270 > th dose independent rect. 10 23
178 89.60 wind 9.0 270 < th dose independent rect. 9 1
183 89.65 precipitation 0.1 90 < th dose independent rect. 14 18
186 89.65 precipitation 0.1 90 < th dose dependent rect. 14 18
188 89.66 wind 9.0 10 < th dose independent rect. 14 19
190 89.68 wind 9.0 10 < th dose independent rect. 9 5
204 89.74 wind 1.0 270 > th dose independent rect. 9 1
206 89.75 wind 5.0 4320 < th dose dependent rect. 8 1
219 89.80 radiation 1.0 270 > th dose independent rect. 9 1
222 89.81 precipitation 0.1 10 < th dose independent rect. 14 19
224 89.81 precipitation 0.1 10 < th dose dependent rect. 14 19
229 89.85 temperature 10.0 1440 > th dose independent rect. 10 5
232 89.85 temperature 10.0 1440 > th dose independent rect. 15 19
260 89.99 humidity 90.0 10 < th dose independent rect. 9 5
274 90.07 radiation 40.0 10 < th dose independent rect. 4 15
296 90.15 atmosphere 995.0 90 > th dose independent rect. 14 18
309 90.24 atmosphere 995.0 10 > th dose independent rect. 14 19
349 90.42 humidity 50.0 90 > th dose independent rect. 14 18
367 90.50 precipitation 0.1 270 < th dose independent rect. 10 23
370 90.50 precipitation 0.1 270 < th dose dependent rect. 10 23
378 90.55 radiation 40.0 270 > th dose independent rect. 9 1
388 90.60 wind 5.0 90 < th dose independent rect. 3 5
403 90.66 wind 9.0 270 < th dose independent rect. 10 23
428 90.74 atmosphere 1015.0 270 < th dose dependent rect. 9 1
475 90.83 wind 1.0 4320 > th dose dependent rect. 8 1
488 90.85 humidity 50.0 10 > th dose independent rect. 14 19
515 90.91 wind 9.0 270 < th dose dependent rect. 8 2
516 90.91 atmosphere 1015.0 10 < th dose dependent rect. 9 5
570 91.00 atmosphere 1015.0 10 < th dose independent rect. 14 19
584 91.06 atmosphere 1015.0 90 < th dose dependent rect. 8 6
586 91.07 radiation 1.0 90 > th dose dependent rect. 8 6
593 91.09 atmosphere 1015.0 90 < th dose independent rect. 14 18
617 91.13 humidity 50.0 270 > th dose independent rect. 6 7
627 91.16 precipitation 0.1 90 < th dose independent rect. 3 5
630 91.16 precipitation 0.1 90 < th dose dependent rect. 3 5
671 91.30 radiation 20.0 1440 < th dose independent rect. 12 1
672 91.30 temperature 20.0 90 > th dose independent rect. 20 17
685 91.33 temperature 10.0 90 > th dose independent rect. 3 5
687 91.33 temperature 30.0 90 < th dose independent rect. 3 5
688 91.33 humidity 50.0 90 > th dose independent rect. 3 5
690 91.33 atmosphere 995.0 90 > th dose independent rect. 3 5
691 91.33 atmosphere 1015.0 90 < th dose independent rect. 3 5
692 91.33 temperature 10.0 90 > th dose independent rect. 8 19
693 91.33 temperature 20.0 90 > th dose independent rect. 8 19
696 91.35 wind 5.0 4320 < th dose dependent rect. 6 3
706 91.39 radiation 40.0 90 < th dose dependent rect. 3 16
707 91.40 wind 9.0 90 < th dose independent rect. 8 19
709 91.41 radiation 40.0 90 < th dose independent rect. 3 5
710 91.41 wind 5.0 90 < th dose independent rect. 23 9
736 91.53 wind 5.0 10 < th dose independent rect. 3 6
738 91.53 humidity 50.0 43200 < th dose dependent rect. 8 1
751 91.58 radiation 40.0 10 < th dose independent rect. 12 8
770 91.66 wind 5.0 270 < th dose independent rect. 3 2
776 91.67 wind 9.0 90 < th dose dependent rect. 14 18
784 91.69 precipitation 0.1 10 < th dose independent rect. 3 6
786 91.69 precipitation 0.1 10 < th dose dependent rect. 3 6
788 91.70 precipitation 0.1 270 < th dose independent rect. 6 7
789 91.70 precipitation 0.1 90 < th dose independent rect. 8 19
791 91.70 precipitation 0.1 270 < th dose dependent rect. 6 7
792 91.70 precipitation 0.1 90 < th dose dependent rect. 8 19
793 91.71 radiation 20.0 4320 < th dose independent rect. 17 3
802 91.74 wind 9.0 270 < th dose independent rect. 6 7
804 91.75 temperature 10.0 270 > th dose independent rect. 6 7
805 91.75 atmosphere 995.0 270 > th dose independent rect. 6 7
806 91.75 atmosphere 1015.0 270 < th dose independent rect. 6 7
810 91.76 temperature 10.0 90 > th dose dependent rect. 3 5
813 91.77 wind 9.0 90 < th dose dependent rect. 3 5
818 91.79 temperature 20.0 4320 > th dose independent rect. 15 11
843 91.84 temperature 20.0 4320 < th dose independent rect. 16 10
903 91.88 radiation 40.0 10 < th dose dependent rect. 12 21
913 91.89 precipitation 0.1 10 < th dose independent rect. 9 18
917 91.89 precipitation 0.1 10 < th dose dependent rect. 9 18
929 91.91 atmosphere 995.0 90 > th dose independent rect. 8 19
937 91.92 wind 1.0 4320 > th dose dependent rect. 6 3
943 91.93 atmosphere 995.0 1440 > th dose independent rect. 10 4
974 91.96 temperature 10.0 43200 > th dose independent rect. 10 1
978 91.96 temperature 10.0 10 > th dose independent rect. 3 6
980 91.96 temperature 30.0 10 < th dose independent rect. 3 6
981 91.96 humidity 50.0 10 > th dose independent rect. 3 6
983 91.96 atmosphere 995.0 10 > th dose independent rect. 3 6
984 91.96 atmosphere 1015.0 10 < th dose independent rect. 3 6
987 91.96 temperature 10.0 10 > th dose independent rect. 9 18
988 91.96 radiation 1.0 270 > th dose dependent sin 9 NA
989 91.96 atmosphere 1015.0 90 < th dose dependent rect. 3 5