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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0222200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF594 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.4 (0.0506) R2 : 0.0623
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.493 (0.12) R2dC : 0.0346 R2C : 0.0272
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.386 (0.106) R2dN8 : 0.0351 R2N8 : 0.0277
σ : 0.953
deviance : 415.26
__
_____
C
peak time of C : 11.7
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
401.98 0.942 3.4 -0.0175 0.499 -0.749 -0.356 -0.046 -0.367 11.8 992.7 7859 -- --
401.99 0.934 3.4 -0.0257 0.498 -0.749 -0.356 -- -0.368 11.8 992.7 7870 -- --
402.53 0.934 3.4 -0.0344 0.501 -0.754 -- -0.0425 -0.369 11.8 992.7 7863 -- --
402.53 0.934 3.4 -0.0409 0.501 -0.753 -- -- -0.37 11.8 992.8 7868 -- --
418.24 0.952 3.41 -0.0631 -- -0.751 -- 0.0544 -0.379 -- 991.3 7710 -- --
413.89 0.954 3.4 0.172 0.493 -- -0.41 -- -0.367 11.7 -- -- -- --
414.62 0.954 3.4 0.156 0.494 -- -- -- -0.369 11.7 -- -- -- --
418.17 0.952 3.41 -0.0541 -- -0.782 -- -- -0.375 -- 991.7 7300 -- --
402.58 0.934 3.4 -- 0.5 -0.742 -- -- -0.366 11.8 992.8 7868 -- --
430 0.969 3.41 0.142 -- -- -- -- -0.375 -- -- -- -- --
415.26 0.953 3.4 -- 0.493 -- -- -- -0.386 11.7 -- -- -- --
418.24 0.952 3.41 -- -- -0.766 -- -- -0.37 -- 990.9 7299 -- --
430.53 0.968 3.41 -- -- -- -- -- -0.391 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 390.31 radiation 10.0 10 > th dose independent rect. 8 5
4 393.49 humidity 70.0 270 > th dose independent rect. 8 1
8 394.66 humidity 50.0 90 > th dose independent rect. 13 19
9 394.76 wind 1.0 30 > th dose independent rect. 8 5
10 394.79 humidity 50.0 30 > th dose independent rect. 8 5
11 394.85 humidity 50.0 270 > th dose independent rect. 11 21
12 394.86 atmosphere 1005.0 90 > th dose independent rect. 4 4
14 394.94 atmosphere 1005.0 10 > th dose independent rect. 4 4
22 395.46 temperature 30.0 90 < th dose independent rect. 13 19
25 395.59 wind 1.0 10 > th dose independent rect. 8 20
27 395.81 radiation 10.0 10 > th dose independent rect. 16 21
46 396.31 atmosphere 1005.0 30 > th dose dependent rect. 4 4
52 396.43 wind 1.0 90 > th dose dependent rect. 8 5
54 396.46 wind 1.0 720 > th dose independent rect. 7 12
62 396.64 wind 5.0 720 < th dose independent rect. 2 5
72 397.04 atmosphere 1015.0 30 < th dose independent rect. 13 19
73 397.05 wind 1.0 270 > th dose independent rect. 8 2
74 397.07 temperature 10.0 1440 > th dose independent rect. 9 5
77 397.07 atmosphere 995.0 1440 > th dose independent rect. 9 5
78 397.07 temperature 10.0 1440 > th dose independent rect. 14 19
81 397.10 humidity 50.0 270 > th dose independent rect. 12 10
84 397.18 temperature 10.0 30 > th dose independent rect. 8 5
86 397.18 atmosphere 995.0 30 > th dose independent rect. 8 5
87 397.18 atmosphere 1015.0 30 < th dose independent rect. 8 5
88 397.18 precipitation 0.1 30 < th dose independent rect. 8 5
89 397.18 temperature 10.0 30 > th dose independent rect. 13 19
90 397.18 precipitation 0.1 30 < th dose dependent rect. 8 5
91 397.18 humidity 50.0 90 > th dose dependent rect. 13 19
93 397.27 wind 9.0 30 < th dose independent rect. 8 5
95 397.31 wind 1.0 10 > th dose dependent rect. 8 5
99 397.37 wind 1.0 720 > th dose independent rect. 8 10
101 397.42 wind 9.0 720 < th dose dependent rect. 3 4
110 397.44 wind 9.0 30 < th dose independent rect. 13 19
112 397.47 temperature 10.0 10 > th dose dependent rect. 8 5
126 397.79 humidity 50.0 30 > th dose independent rect. 22 15
141 397.89 temperature 30.0 270 < th dose independent rect. 8 2
166 398.12 wind 3.0 720 < th dose independent rect. 2 13
170 398.15 precipitation 0.1 30 < th dose independent rect. 13 19
172 398.15 precipitation 0.1 30 < th dose dependent rect. 13 19
191 398.22 radiation 20.0 10 < th dose dependent rect. 4 13
192 398.23 radiation 10.0 10 < th dose independent rect. 4 13
195 398.24 wind 3.0 90 > th dose independent rect. 2 11
202 398.34 wind 7.0 270 < th dose independent rect. 8 1
204 398.36 radiation 1.0 10 > th dose dependent rect. 8 5
208 398.39 humidity 50.0 270 > th dose independent rect. 22 13
247 398.50 radiation 20.0 270 > th dose independent rect. 9 1
269 398.70 atmosphere 1005.0 270 > th dose dependent rect. 4 1
272 398.74 humidity 50.0 270 > th dose dependent rect. 8 1
280 398.83 wind 1.0 720 > th dose independent rect. 7 19
285 398.86 precipitation 0.1 270 < th dose independent rect. 8 2
287 398.86 precipitation 0.1 270 < th dose dependent rect. 8 2
290 398.90 temperature 10.0 270 > th dose independent rect. 8 2
291 398.90 atmosphere 995.0 270 > th dose independent rect. 8 2
292 398.90 atmosphere 1015.0 270 < th dose independent rect. 8 2
293 398.90 temperature 10.0 270 > th dose independent rect. 10 22
308 398.96 precipitation 0.1 270 < th dose independent rect. 22 13
309 398.96 precipitation 0.1 270 < th dose dependent rect. 22 13
310 398.97 temperature 10.0 270 > th dose dependent rect. 8 1
311 398.98 radiation 20.0 90 > th dose independent sin 8 NA
330 399.02 wind 9.0 270 < th dose independent rect. 10 22
333 399.03 atmosphere 995.0 10 > th dose independent rect. 8 20
338 399.06 radiation 30.0 720 < th dose dependent rect. 3 4
342 399.08 atmosphere 995.0 270 > th dose independent rect. 15 11
351 399.14 temperature 30.0 270 < th dose independent rect. 7 4
355 399.19 radiation 10.0 10 < th dose independent rect. 4 10
378 399.35 wind 3.0 720 > th dose independent rect. 2 17
396 399.39 radiation 20.0 10 < th dose dependent rect. 6 11
398 399.40 temperature 10.0 270 > th dose independent rect. 11 11
399 399.40 temperature 10.0 270 > th dose independent rect. 22 13
400 399.40 atmosphere 995.0 270 > th dose independent rect. 22 13
418 399.47 radiation 1.0 90 > th dose dependent rect. 8 5
419 399.49 temperature 10.0 1440 > th dose independent rect. 14 9
422 399.49 wind 1.0 90 > th dose independent rect. 8 11
423 399.49 temperature 10.0 1440 > th dose independent rect. 23 15
426 399.49 atmosphere 995.0 1440 > th dose independent rect. 23 15
430 399.52 temperature 10.0 30 > th dose independent rect. 13 9
432 399.52 atmosphere 1010.0 30 < th dose independent rect. 13 9
434 399.52 wind 9.0 30 < th dose independent rect. 22 15
435 399.52 temperature 10.0 30 > th dose independent rect. 22 15
436 399.52 atmosphere 995.0 30 > th dose independent rect. 22 15
437 399.53 wind 9.0 270 < th dose independent rect. 22 13
450 399.62 precipitation 0.1 270 < th dose independent rect. 15 11
452 399.62 precipitation 0.1 270 < th dose dependent rect. 15 11
460 399.65 atmosphere 995.0 30 > th dose independent rect. 13 19
462 399.67 atmosphere 1015.0 270 < th dose independent rect. 11 11
472 399.69 temperature 10.0 270 > th dose independent rect. 11 20
488 399.76 wind 9.0 270 < th dose independent rect. 11 20
491 399.78 precipitation 0.1 30 < th dose independent rect. 22 15
492 399.78 precipitation 0.1 30 < th dose dependent rect. 22 15
499 399.80 radiation 1.0 90 > th dose dependent rect. 16 21
511 399.82 radiation 40.0 30 < th dose independent rect. 13 19
519 399.87 humidity 50.0 10 > th dose independent rect. 13 9
523 399.89 wind 9.0 30 < th dose independent rect. 13 9
528 399.91 wind 1.0 720 > th dose independent rect. 15 4
540 399.94 precipitation 0.1 10 < th dose independent rect. 13 9
542 399.94 precipitation 0.1 10 < th dose dependent rect. 13 9
547 399.95 temperature 10.0 30 > th dose dependent rect. 22 15
556 400.00 radiation 1.0 270 > th dose dependent rect. 8 2
558 400.01 radiation 20.0 90 < th dose independent rect. 4 7
566 400.04 humidity 70.0 720 > th dose independent rect. 23 10
567 400.05 radiation 40.0 270 < th dose independent rect. 8 1
584 400.11 wind 9.0 270 < th dose independent rect. 11 11
585 400.11 wind 1.0 10 > th dose independent rect. 8 12
587 400.13 wind 9.0 90 < th dose dependent rect. 4 13
594 400.18 temperature 15.0 720 > th dose independent rect. 3 4
595 400.18 atmosphere 1015.0 720 < th dose independent rect. 3 4
611 400.23 wind 7.0 10 < th dose independent rect. 4 4
613 400.23 precipitation 0.1 10 < th dose independent rect. 8 20
614 400.23 precipitation 0.1 10 < th dose dependent rect. 8 20
620 400.25 temperature 30.0 720 < th dose independent rect. 3 4
621 400.25 humidity 50.0 720 > th dose independent rect. 3 4
623 400.25 atmosphere 995.0 720 > th dose independent rect. 3 4
624 400.25 radiation 40.0 720 < th dose independent rect. 3 4
625 400.25 temperature 10.0 720 > th dose independent rect. 7 20
627 400.25 wind 1.0 90 > th dose dependent rect. 2 11
638 400.28 temperature 15.0 720 > th dose independent rect. 19 20
642 400.29 temperature 10.0 10 > th dose independent rect. 4 4
644 400.29 temperature 30.0 10 < th dose independent rect. 4 4
645 400.29 humidity 50.0 10 > th dose independent rect. 4 4
647 400.29 atmosphere 995.0 10 > th dose independent rect. 4 4
648 400.29 atmosphere 1015.0 10 < th dose independent rect. 4 4
652 400.29 temperature 10.0 10 > th dose independent rect. 8 20
657 400.30 temperature 10.0 10 > th dose dependent rect. 8 20
661 400.31 wind 1.0 90 > th dose independent rect. 22 15
687 400.34 radiation 40.0 720 < th dose independent rect. 15 4
695 400.36 wind 9.0 720 < th dose independent rect. 19 20
696 400.36 humidity 50.0 30 > th dose dependent rect. 8 5
697 400.37 temperature 10.0 720 > th dose independent rect. 15 4
699 400.37 atmosphere 1015.0 720 < th dose independent rect. 15 4
711 400.39 radiation 1.0 270 > th dose dependent rect. 16 18
715 400.41 precipitation 0.1 10 < th dose independent rect. 4 4
718 400.41 precipitation 0.1 10 < th dose dependent rect. 4 4
719 400.41 radiation 30.0 90 < th dose dependent rect. 4 7
720 400.43 humidity 50.0 90 > th dose dependent rect. 19 13
744 400.50 radiation 10.0 10 > th dose independent sin 3 NA
759 400.54 radiation 40.0 10 < th dose independent rect. 4 4
778 400.57 temperature 10.0 10 > th dose dependent rect. 4 4
787 400.61 humidity 50.0 270 > th dose dependent rect. 7 4
790 400.62 humidity 50.0 270 > th dose independent rect. 3 14
792 400.63 radiation 40.0 270 < th dose independent rect. 15 11
795 400.64 wind 9.0 30 < th dose independent rect. 8 20
799 400.66 atmosphere 995.0 30 > th dose dependent rect. 13 19
803 400.67 atmosphere 995.0 30 > th dose dependent rect. 8 5
822 400.70 wind 1.0 10 > th dose independent rect. 22 15
827 400.72 atmosphere 1015.0 270 < th dose independent rect. 10 22
830 400.73 radiation 20.0 10 < th dose dependent rect. 6 8
840 400.76 wind 3.0 720 < th dose independent rect. 4 2
859 400.80 precipitation 0.1 270 < th dose independent rect. 11 20
863 400.80 precipitation 0.1 270 < th dose dependent rect. 11 20
871 400.81 wind 9.0 270 < th dose dependent rect. 2 13
890 400.85 temperature 30.0 270 < th dose independent rect. 22 13
896 400.86 precipitation 0.1 1440 < th dose independent rect. 9 4
908 400.86 precipitation 0.1 1440 < th dose dependent rect. 9 4
911 400.87 radiation 20.0 30 < th dose independent rect. 4 4
919 400.88 atmosphere 995.0 270 > th dose independent rect. 6 21
937 400.92 temperature 10.0 270 > th dose independent rect. 15 11
938 400.92 wind 9.0 270 < th dose independent rect. 2 13
939 400.92 temperature 10.0 270 > th dose independent rect. 2 13
940 400.92 atmosphere 1015.0 270 < th dose independent rect. 2 13
943 400.93 wind 9.0 720 < th dose independent rect. 15 4
949 400.94 wind 3.0 10 < th dose dependent rect. 4 18
987 401.01 wind 1.0 10 > th dose independent rect. 13 9
995 401.02 wind 9.0 10 < th dose dependent rect. 4 4
997 401.03 humidity 50.0 720 > th dose independent rect. 1 9