Os07g0222100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Alpha-amylase inhibitor 4 (SI alpha-4).
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Os07g0222100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Alpha-amylase inhibitor 4 (SI alpha-4).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.62 | 0.296 | 3.19 | 0.123 | 0.203 | -0.184 | 0.0284 | -0.918 | 0.0152 | 7.87 | 70 | 4977 | -- | -- |
| 40.56 | 0.297 | 3.2 | 0.103 | 0.205 | -0.247 | -0.0885 | -- | -0.041 | 7.76 | 74 | 7828 | -- | -- |
| 39.47 | 0.293 | 3.2 | 0.129 | 0.184 | -0.183 | -- | -0.972 | 0.0127 | 7.81 | 70.63 | 6009 | -- | -- |
| 40.58 | 0.297 | 3.2 | 0.102 | 0.21 | -0.252 | -- | -- | -0.0438 | 7.78 | 73.02 | 7820 | -- | -- |
| 41.25 | 0.299 | 3.2 | 0.134 | -- | -0.186 | -- | -0.94 | 0.0157 | -- | 70.62 | 5876 | -- | -- |
| 41.69 | 0.303 | 3.19 | 0.0695 | 0.179 | -- | -0.105 | -- | 0.0268 | 7.6 | -- | -- | -- | -- |
| 41.71 | 0.302 | 3.19 | 0.0674 | 0.179 | -- | -- | -- | 0.0272 | 7.81 | -- | -- | -- | -- |
| 42.37 | 0.303 | 3.21 | 0.107 | -- | -0.232 | -- | -- | -0.0465 | -- | 74 | 8609 | -- | -- |
| 40.79 | 0.297 | 3.2 | -- | 0.19 | -0.249 | -- | -- | -0.0536 | 7.66 | 73 | 7393 | -- | -- |
| 43.44 | 0.308 | 3.19 | 0.0695 | -- | -- | -- | -- | 0.0297 | -- | -- | -- | -- | -- |
| 41.83 | 0.303 | 3.19 | -- | 0.179 | -- | -- | -- | 0.0197 | 7.79 | -- | -- | -- | -- |
| 42.53 | 0.304 | 3.21 | -- | -- | -0.252 | -- | -- | -0.0534 | -- | 73 | 7143 | -- | -- |
| 43.57 | 0.308 | 3.19 | -- | -- | -- | -- | -- | 0.022 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.23 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 2 | 37.32 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 4 | 37.40 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 2 | 2 |
| 9 | 37.96 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 12 | 38.09 | temperature | 25.0 | 90 | > th | dose independent | rect. | 1 | 1 |
| 15 | 38.13 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 1 | 2 |
| 26 | 38.18 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 27 | 38.18 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 30 | 38.18 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 34 | 38.18 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 43 | 38.18 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 44 | 38.18 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 64 | 38.18 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 81 | 38.26 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 82 | 38.26 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 90 | 38.27 | wind | 5.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 94 | 38.28 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 96 | 38.28 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 97 | 38.28 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 100 | 38.28 | humidity | 90.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 102 | 38.28 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 104 | 38.28 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 109 | 38.28 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 110 | 38.28 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 112 | 38.28 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 117 | 38.28 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 122 | 38.28 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 126 | 38.32 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 127 | 38.32 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 128 | 38.35 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 141 | 38.44 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 23 |
| 144 | 38.44 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 199 | 38.68 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 4 | 5 |
| 201 | 38.70 | humidity | 90.0 | 90 | < th | dose independent | rect. | 2 | 1 |
| 213 | 38.86 | humidity | 50.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 238 | 38.88 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 243 | 38.95 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 24 | 10 |
| 257 | 39.01 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 267 | 39.02 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 269 | 39.02 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 21 | 13 |
| 272 | 39.03 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 284 | 39.04 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 321 | 39.28 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 332 | 39.34 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 348 | 39.35 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 353 | 39.38 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 7 | 8 |
| 354 | 39.38 | humidity | 50.0 | 4320 | > th | dose dependent | rect. | 11 | 2 |
| 359 | 39.39 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 12 | 4 |
| 365 | 39.41 | humidity | 80.0 | 14400 | < th | dose dependent | sin | 8 | NA |
| 366 | 39.41 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 390 | 39.45 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 12 | 1 |
| 407 | 39.47 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 408 | 39.47 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 412 | 39.47 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 415 | 39.48 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 444 | 39.50 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 10 | 3 |
| 450 | 39.51 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 482 | 39.53 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 19 | 18 |
| 486 | 39.53 | humidity | 60.0 | 4320 | > th | dose dependent | rect. | 3 | 11 |
| 489 | 39.53 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 530 | 39.55 | humidity | 60.0 | 14400 | < th | dose dependent | sin | 19 | NA |
| 543 | 39.55 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 18 | 23 |
| 583 | 39.57 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 8 | 7 |
| 624 | 39.58 | radiation | 10.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 625 | 39.58 | humidity | 60.0 | 14400 | < th | dose dependent | no | NA | NA |
| 642 | 39.58 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 3 | 13 |
| 673 | 39.58 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 23 | 17 |
| 759 | 39.59 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 778 | 39.60 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 8 | 9 |
| 801 | 39.60 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 15 | 23 |
| 806 | 39.61 | humidity | 50.0 | 4320 | > th | dose dependent | sin | 4 | NA |
| 937 | 39.64 | humidity | 70.0 | 4320 | > th | dose independent | sin | 3 | NA |
| 962 | 39.64 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 14 | 1 |